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70 changes: 15 additions & 55 deletions README.md
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<!-- README.md is generated from README.Rmd. Please edit that file -->

# Acoustic Glider Analysis Tools and Environment

<img src="https://raw.githubusercontent.com/FortAwesome/Font-Awesome/6.x/svgs/regular/calendar-check.svg" style="width:0.88em;height:1em" />
*Last Update: 14 Aug 2024*

A collection of MATLAB-based tools for piloting passive acoustic
gliders, processing glider positional and environmental data, and
analyzing glider-collected passive acoustic data, particularly for
surveys of marine mammals.

This package is very much under development and is hosted and version
controlled on [GitHub](https://github.com/sfregosi/agate-public). My
hope is that I will maintain a [stable
release](https://github.com/sfregosi/agate-public/releases) and then for
those interested in the latest functionality, the GitHub repository can
be cloned. For those interested in to the package, I suggest creating a
fork and using pull requests to contribute. See the [How to
contribute](https://sfregosi.github.io/agate-public/contribute.html)
page for more detail. Please contact me if you have any questions,
feedback, or suggestions!

This code was either developed or most recently updated and tested with
MATLAB version 2022b, but has undergone some testing with 2020b.

**Detailed documentation and information on dependencies can be found at
[sfregosi.github.io/agate-public](https://sfregosi.github.io/agate-public)**
*(the documentation is also under construction and I welcome any and all
feedback!)*
<img src="https://raw.githubusercontent.com/FortAwesome/Font-Awesome/6.x/svgs/regular/calendar-check.svg" style="width:0.88em;height:1em"> *Last Update: 14 Aug 2024*

A collection of MATLAB-based tools for piloting passive acoustic gliders, processing glider positional and environmental data, and analyzing glider-collected passive acoustic data, particularly for surveys of marine mammals.

This package is very much under development and is hosted and version controlled on [GitHub](https://github.com/sfregosi/agate-public). My hope is that I will maintain a [stable release](https://github.com/sfregosi/agate-public/releases) and then for those interested in the latest functionality, the GitHub repository can be cloned. For those interested in to the package, I suggest creating a fork and using pull requests to contribute. See the [How to contribute](https://sfregosi.github.io/agate-public/contribute.html) page for more detail. Please contact me if you have any questions, feedback, or suggestions!

This code was either developed or most recently updated and tested with MATLAB version 2022b, but has undergone some testing with 2020b.

**Detailed documentation and information on dependencies can be found at [sfregosi.github.io/agate-public](https://sfregosi.github.io/agate-public)**
*(the documentation is also under construction and I welcome any and all feedback!)*

## Disclaimer

<sub>The scientific results and conclusions, as well as any views or
opinions expressed herein, are those of the author(s) and do not
necessarily reflect the views of NOAA or the Department of
Commerce.</sub>

<sub>This repository is a scientific product and is not official
communication of the National Oceanic and Atmospheric Administration, or
the United States Department of Commerce. All NOAA GitHub project code
is provided on an ‘as is’ basis and the user assumes responsibility for
its use. Any claims against the Department of Commerce or Department of
Commerce bureaus stemming from the use of this GitHub project will be
governed by all applicable Federal law. Any reference to specific
commercial products, processes, or services by service mark, trademark,
manufacturer, or otherwise, does not constitute or imply their
endorsement, recommendation or favoring by the Department of Commerce.
The Department of Commerce seal and logo, or the seal and logo of a DOC
bureau, shall not be used in any manner to imply endorsement of any
commercial product or activity by DOC or the United States
Government.</sub>

<sub>Software code created by U.S. Government employees is not subject
to copyright in the United States (17 U.S.C. §105). The United
States/Department of Commerce reserves all rights to seek and obtain
copyright protection in countries other than the United States for
Software authored in its entirety by the Department of Commerce. To this
end, the Department of Commerce hereby grants to Recipient a
royalty-free, nonexclusive license to use, copy, and create derivative
works of the Software outside of the United States.</sub>
<sub>The scientific results and conclusions, as well as any views or opinions expressed herein, are those of the author(s) and do not necessarily reflect the views of NOAA or the Department of Commerce.</sub>

<sub>This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.</sub>

<sub>Software code created by U.S. Government employees is not subject to copyright in the United States (17 U.S.C. §105). The United States/Department of Commerce reserves all rights to seek and obtain copyright protection in countries other than the United States for Software authored in its entirety by the Department of Commerce. To this end, the Department of Commerce hereby grants to Recipient a royalty-free, nonexclusive license to use, copy, and create derivative works of the Software outside of the United States.</sub>
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<!-- README.md is generated from README.Rmd. Please edit that file -->
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# Acoustic Glider Analysis Tools and Environment

<img src="https://raw.githubusercontent.com/FortAwesome/Font-Awesome/6.x/svgs/regular/calendar-check.svg" style="width:0.88em;height:1em" /> *Last Update: `r format(Sys.Date(), "%d %b %Y")`*
<img src="https://raw.githubusercontent.com/FortAwesome/Font-Awesome/6.x/svgs/regular/calendar-check.svg" style="width:0.88em;height:1em"> *Last Update: `r format(Sys.Date(), "%d %b %Y")`*

A collection of MATLAB-based tools for piloting passive acoustic gliders, processing glider positional and environmental data, and analyzing glider-collected passive acoustic data, particularly for surveys of marine mammals.

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