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Merge branch 'Predizioni-Epidemiologiche-Italia:main' into main
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sfiandrino authored Dec 12, 2023
2 parents 0c9135e + ec8f8c7 commit ed7dae0
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32 changes: 16 additions & 16 deletions .github/data-storage/changes_db.json
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@@ -1,39 +1,39 @@
{
"ISI": [
{
"model": "FluABCaster",
"changes": [
"previsioni/ISI-FluABCaster/2023_47.csv"
]
}
],
"EpiQMUL": [
{
"model": "ARIMA_QMUL",
"model": "SEIR_QMUL",
"changes": [
"previsioni/EpiQMUL-ARIMA_QMUL/2023_47.csv"
"previsioni/EpiQMUL-SEIR_QMUL/2023_48.csv"
]
},
{
"model": "SEIR_QMUL",
"model": "ARIMA_QMUL",
"changes": [
"previsioni/EpiQMUL-SEIR_QMUL/2023_47.csv"
"previsioni/EpiQMUL-ARIMA_QMUL/2023_48.csv"
]
}
],
"ev_and_modelers": [
"ISI": [
{
"model": "DeepRE",
"model": "FluABCaster",
"changes": [
"previsioni/ev_and_modelers-DeepRE/2023_47.csv"
"previsioni/ISI-FluABCaster/2023_48.csv"
]
}
],
"CSL_PoliTo": [
{
"model": "metaFlu",
"changes": [
"previsioni/CSL_PoliTo-metaFlu/2023_47.csv"
"previsioni/CSL_PoliTo-metaFlu/2023_48.csv"
]
}
],
"ev_and_modelers": [
{
"model": "DeepRE",
"changes": [
"previsioni/ev_and_modelers-DeepRE/2023_48.csv"
]
}
]
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44 changes: 22 additions & 22 deletions .github/data-storage/target_db.json
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@@ -1,26 +1,26 @@
{
"changes": [
"sorveglianza/2023-2024/abruzzo-2023_47.csv",
"sorveglianza/2023-2024/basilicata-2023_47.csv",
"sorveglianza/2023-2024/calabria-2023_47.csv",
"sorveglianza/2023-2024/campania-2023_47.csv",
"sorveglianza/2023-2024/emilia_romagna-2023_47.csv",
"sorveglianza/2023-2024/friuli_venezia_giulia-2023_47.csv",
"sorveglianza/2023-2024/italia-2023_47.csv",
"sorveglianza/2023-2024/lazio-2023_47.csv",
"sorveglianza/2023-2024/liguria-2023_47.csv",
"sorveglianza/2023-2024/lombardia-2023_47.csv",
"sorveglianza/2023-2024/marche-2023_47.csv",
"sorveglianza/2023-2024/molise-2023_47.csv",
"sorveglianza/2023-2024/pa_bolzano-2023_47.csv",
"sorveglianza/2023-2024/pa_trento-2023_47.csv",
"sorveglianza/2023-2024/piemonte-2023_47.csv",
"sorveglianza/2023-2024/puglia-2023_47.csv",
"sorveglianza/2023-2024/sardegna-2023_47.csv",
"sorveglianza/2023-2024/sicilia-2023_47.csv",
"sorveglianza/2023-2024/toscana-2023_47.csv",
"sorveglianza/2023-2024/umbria-2023_47.csv",
"sorveglianza/2023-2024/valle_d_aosta-2023_47.csv",
"sorveglianza/2023-2024/veneto-2023_47.csv"
"sorveglianza/2023-2024/abruzzo-2023_48.csv",
"sorveglianza/2023-2024/basilicata-2023_48.csv",
"sorveglianza/2023-2024/calabria-2023_48.csv",
"sorveglianza/2023-2024/campania-2023_48.csv",
"sorveglianza/2023-2024/emilia_romagna-2023_48.csv",
"sorveglianza/2023-2024/friuli_venezia_giulia-2023_48.csv",
"sorveglianza/2023-2024/italia-2023_48.csv",
"sorveglianza/2023-2024/lazio-2023_48.csv",
"sorveglianza/2023-2024/liguria-2023_48.csv",
"sorveglianza/2023-2024/lombardia-2023_48.csv",
"sorveglianza/2023-2024/marche-2023_48.csv",
"sorveglianza/2023-2024/molise-2023_48.csv",
"sorveglianza/2023-2024/pa_bolzano-2023_48.csv",
"sorveglianza/2023-2024/pa_trento-2023_48.csv",
"sorveglianza/2023-2024/piemonte-2023_48.csv",
"sorveglianza/2023-2024/puglia-2023_48.csv",
"sorveglianza/2023-2024/sardegna-2023_48.csv",
"sorveglianza/2023-2024/sicilia-2023_48.csv",
"sorveglianza/2023-2024/toscana-2023_48.csv",
"sorveglianza/2023-2024/umbria-2023_48.csv",
"sorveglianza/2023-2024/valle_d_aosta-2023_48.csv",
"sorveglianza/2023-2024/veneto-2023_48.csv"
]
}
1 change: 1 addition & 0 deletions .github/logs/ensemble-members/2023_47.json
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@@ -0,0 +1 @@
[{"regions": [{"id": "01", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "02", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}]}, {"id": "03", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}]}, {"id": "04", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "05", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "06", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "IT", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "EpiQMUL-ARIMA_QMUL", "EpiQMUL-SEIR_QMUL", "ISI-FluABCaster", "ISI-GLEAM", "ISI-IPSICast", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "EpiQMUL-ARIMA_QMUL", "EpiQMUL-SEIR_QMUL", "ISI-FluABCaster", "ISI-GLEAM", "ISI-IPSICast", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "EpiQMUL-ARIMA_QMUL", "EpiQMUL-SEIR_QMUL", "ISI-FluABCaster", "ISI-GLEAM", "ISI-IPSICast", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "EpiQMUL-ARIMA_QMUL", "EpiQMUL-SEIR_QMUL", "ISI-FluABCaster", "ISI-GLEAM", "ISI-IPSICast", "ev_and_modelers-DeepRE"]}]}, {"id": "07", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "08", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "09", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "10", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "11", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "14", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "15", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "16", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "17", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "18", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "12", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}]}, {"id": "13", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "19", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}, {"id": "20", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ev_and_modelers-DeepRE"]}]}, {"id": "21", "members": [{"horizon": 1, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 2, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 3, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}, {"horizon": 4, "models": ["CSL_PoliTo-metaFlu", "ISI-FluABCaster", "ev_and_modelers-DeepRE"]}]}]}]
3 changes: 2 additions & 1 deletion .github/workflows/baseline.yml
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Expand Up @@ -7,13 +7,14 @@ on:
# scheduled run every Wednesday at 03.15 a.m. (Wednesday 02.15 a.m. UTC)
# TODO for the time being upload is Thursday at 03.15 a.m. (Thursday 02.15 a.m. UTC)
schedule:
- cron: '15 02 * * 4'
- cron: '15 02 * * 3'



jobs:

baseline_job:
if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
runs-on: ubuntu-latest
steps:

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3 changes: 2 additions & 1 deletion .github/workflows/ensemble.yml
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Expand Up @@ -6,12 +6,13 @@ on:
# scheduled run every Wednesday at 03.00 a.m. (Wednesday 02.00 a.m.UTC)
# TODO for the time being upload is Thursday at 03.00 a.m. (Thursday 02.00 a.m. UTC)
schedule:
- cron: '00 02 * * 4'
- cron: '00 02 * * 3'


jobs:

ensemble_job:
if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
runs-on: ubuntu-latest
steps:

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3 changes: 2 additions & 1 deletion .github/workflows/upload_baseline_and_ensemble.yml
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Expand Up @@ -4,13 +4,14 @@ on:
# scheduled submission every Wednesday at 04.00 a.m. (Wednesday 03.00 a.m.UTC)
# TODO for the time being upload is Thursday at 04.00 a.m. (Thursday 03.00 a.m. UTC)
schedule:
- cron: '00 03 * * 4'
- cron: '00 03 * * 3'

workflow_dispatch:


jobs:
scheduled-submit:
if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
runs-on: ubuntu-latest

steps:
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3 changes: 2 additions & 1 deletion .github/workflows/upload_forecasts.yml
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Expand Up @@ -3,13 +3,14 @@ name: Forecast Upload
on:
# scheduled submission every Wednesday at 00.10 a.m. (Tuesday 23.10 p.m.UTC)
schedule:
- cron: '10 23 * * 2,3'
- cron: '10 23 * * 2'

workflow_dispatch:


jobs:
scheduled-submit:
if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
runs-on: ubuntu-latest

steps:
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1 change: 1 addition & 0 deletions .github/workflows/upload_surveillance.yml
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Expand Up @@ -10,6 +10,7 @@ on:

jobs:
scheduled-submit:
if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
runs-on: ubuntu-latest

steps:
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