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seqan3 argument parser #36

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seqan3 argument parser #36

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joshuak94
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The first step of introducing seqan3 into vaquita. This pull request does a few things:

  1. Add seqan3 as a submodule and switch seqan to a submodule. This allows both of them to be updated automatically in case of errors/bugs.
  2. Replace the argument parsers in vaquita with the seqan3::argument_parser
  3. Terminate the main vaquita program in case any step returns false.

@joshuak94
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@xenigmax I can't request reviewers...

@joshuak94 joshuak94 changed the base branch from develop to develop_longread November 14, 2019 09:43
@joshuak94 joshuak94 closed this Nov 14, 2019
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Superseded by #37

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