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Retreat simple todos

smehringer edited this page Feb 1, 2019 · 2 revisions

PMSB projects

  • mini pairwise alignment app [@rrahn]
  • structure IO format [@jwinkler]
  • mini tcoffee app [@jwinkler]
  • zstd stream (PMSB + Bachelor Arbeit Hannes) [@h-2]
  • argument parser config file reading [@smehringer]
  • irgendwas mit shapes [@eseiler]
  • Benchmarks and Unit Test [der der kein Projekt hat oder @rrahn]

todos

  • Code Coverage erhoehen
  • Reduzierte amino-amic Alphabete (Murphy)
  • unit tests argument parser -> Code Coverage

More complicated stuff

  • concurrent queue
  • vcf support (annotation file)
  • fixed string (extend constexpr string, variable size in fixed size buffer)
  • argument parser: CTD (Emanuele), CWL, phoning home, read in from config file
  • zstd stream (PMSB + Bachelor Arbeit Hannes)
  • FAST5 format (PMSB oder Pay)
  • structure IO format (PMSB)
  • FASTA index?
  • views: drop, drop_until, ...

Benchmarks

  • translation tables (sara?)
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