Release 1.0.3

Fixes

• Resolved an issue that resulted in underestimating expression values under certain circumstances. This issue affected the expression estimation of very short transcripts (transcript size ≈ window size).
• Resolved an issue where loading the index might have failed.

Compiler support

• GCC: 12, 13, 14 (latest at the time of release)
• Clang: 17, 18, 19 (latest at the time of release)
• IntelLLVM (Intel oneAPI DPC++/C++ Compiler) 2025.0 (older versions may work)

Full Changelog: needle-v1.0.2...needle-v1.0.3

Release 1.0.3-rc.2

Second release candidate for 1.0.3.

Release 1.0.3-rc.1

First release candidate for 1.0.3.

Release 1.0.2

Added features:

• ram friendly parallelization for minimiser
• dynamic updates via insertion and deletion of sequencing experiments
• improved false positive rate determination

Release 1.0.1

The first level when using the automatic cutoff approach is the cutoff + 1, the cutoffs are now the same as in other tools like Mantis.

Release 1.0.0

Initial release.