fix:update actions, add action for creating combined ontology

.github/workflows/createCombinedTurtle.yml

@@ -0,0 +1,63 @@
+name: Run createSchemas.py on push to /schemas
+
+on:
+  push:
+    paths:
+      - 'schemas/**'
+    paths-ignore:
+      - 'schemas/ImagingOntologyCombined.ttl'
+
+  workflow_dispatch: # Allows manual triggering of the workflow
+
+jobs:
+  run-create-schemas:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: '3.12'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+
+      - name: Run createCombinedTurtle.py
+        run: python src/createCombinedTurtle.py
+
+      - name: Set up Git user
+        run: |
+          git config --global user.name "github-actions[bot]"
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+
+      - name: Commit changes to current repo
+        run: |
+          git add schemas/ImagingOntologyCombined.ttl
+          git commit -m "Update ImagingOntologyCombined.ttl [from GitHub Actions]"
+          git push origin main
+        env:
+          SECOND_REPO_PAT: ${{ secrets.SECOND_REPO_PAT }}
+
+      - name: Clone, create new branch, commit changes and make PR to imaging-fair-calculator repo
+        run: |
+          git clone "https://x-access-token:${{ secrets.SECOND_REPO_PAT }}@github.com/sdsc-ordes/imaging-plaza-fair-indicator-api.git"
+          cd imaging-plaza-fair-indicator-api
+          git checkout -b combine-ontology-${{ github.run_id }}
+          cp ../schemas/ImagingOntologyCombined.ttl schemas/
+          git add schemas/ImagingOntologyCombined.ttl
+          git commit -m "Update ImagingOntologyCombined.ttl [from GitHub Actions]"
+          git push https://x-access-token:${{ secrets.SECOND_REPO_PAT }}@github.com/sdsc-ordes/imaging-plaza-fair-indicator-api.git
+          run: |
+            gh pr create \
+              --title "Update ImagingOntologyCombined.ttl [from GitHub Actions]" \
+              --body "This PR updates the ImagingOntologyCombined.ttl file in the schemas directory." \
+              --base develop \
+              --head update-ImagingOntologyCombined-${{ github.run_id }}
+        env:
+          SECOND_REPO_PAT: ${{ secrets.SECOND_REPO_PAT }}
+          GH_TOKEN: ${{ secrets.SECOND_REPO_PAT }}