Here are the scripts for pan-genome graph based haplotype threading with short reads (by Craig Dent)
ANALYSIS.sh gives the pipeline, where the example data can be downloaded here: https://mega.nz/folder/S8shkDhD#aJKNU8QAnUWi3qWUNcKGpA
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Here are the scripts for pan-genome based haplotype threading with short reads (by Craig Dent)
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schneebergerlab/haplotype_threading
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Here are the scripts for pan-genome based haplotype threading with short reads (by Craig Dent)
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