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v1.1.4 - Shang Tang (patch 4)
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@tkchafin tkchafin released this 09 Dec 10:29
1.1.4
cd4b854
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Enhancements & fixes

  • Module updates and remove Anaconda references

Software dependencies

Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.

Dependency Old version New version
bcftools 1.17 1.20
blastn 2.14.1 2.15.0
deepvariant 1.5.0 1.6.1
Python 3.8.3 3.9.1
samtools 1.17 1.21

NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if version information isn't present.

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