Code

VCFTOOLs site_pi and het options#62

Code

Merged

gq1 merged 10 commits intodevsanger-tol/variantcalling:devfrom vcftools_site_pi_hetsanger-tol/variantcalling:vcftools_site_pi_hetCopy head branch name to clipboardNov 16, 2023

+569-9

Commits

Commits on Nov 6, 2023

• nf-core modules install vcftools

  gq1

  committed
  2c10d8d

• nf-core modules update deepvariant

  gq1

  committed
  124c585

Commits on Nov 7, 2023

• create a sub workflow to call vcftools to calculate per site nucleotide diversity and heterozygosity

  gq1

  committed
  908e9f4

• Patch vcftools modules to allow an input for position files

  Show description for 27a04a8
  gq1

  committed
  27a04a8

• remove trailing white spaces

  gq1

  committed
  1feb4d8

Commits on Nov 8, 2023

• Set the positions to an empty list when no file provided.

  gq1

  committed
  3de0d8a

Commits on Nov 9, 2023

• re-patch vcftools modules

  gq1

  committed
  a2128da

Commits on Nov 10, 2023

• update vcftools module patch

  gq1

  committed
  c74f90e

Commits on Nov 13, 2023

• not run vcftools on gvcf files

  gq1

  committed
  e8a24cf

Commits on Nov 16, 2023

• Update module vcftools to add one more keywords to minimum 3.

  gq1

  committed
  1882fef