Missing align flag

sanger-tol · Jun 24, 2024 · 9dd4af7 · 9dd4af7
1 parent a94b5ad
commit 9dd4af7
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diff --git a/conf/test_align.config b/conf/test_align.config
@@ -21,6 +21,7 @@ params {
 
     // Input data
     input  = "${projectDir}/assets/samplesheet_test_align.csv"
+    align  = true
 
     // Fasta references
     fasta = "https://tolit.cog.sanger.ac.uk/test-data/Cantharis_rufa/assembly/GCA_947369205.1_OX376310.1_CANBKR010000003.1.fasta.gz"

diff --git a/conf/test_full_align.config b/conf/test_full_align.config
@@ -18,6 +18,7 @@ params {
 
     // Input data for full size test
     input = "${projectDir}/assets/samplesheet_test_full_align.csv"
+    align = true
 
     // Fasta references
     fasta = "/lustre/scratch124/tol/projects/darwin/data/insects/Polyommatus_icarus/assembly/release/ilPolIcar1.1/insdc/GCA_937595015.1.fasta.gz"