Set the positions to an empty list when no file provided.

sanger-tol · Nov 8, 2023 · 3de0d8a · 3de0d8a
1 parent 1feb4d8
commit 3de0d8a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/variantcalling.nf b/workflows/variantcalling.nf
@@ -41,7 +41,7 @@ if ( (params.include_positions) && (params.exclude_positions) ){
 } else if (params.exclude_positions){
     ch_positions = Channel.fromPath(params.exclude_positions) 
 } else { 
-    ch_positions = Channel.empty() 
+    ch_positions = [] 
 }
 
 /*