Code

Hic opt#224

Code

Merged

weaglesBio merged 49 commits intogalaxy_devsanger-tol/treeval:galaxy_devfrom hic_optsanger-tol/treeval:hic_optCopy head branch name to clipboardFeb 6, 2024

+534-111

Commits

Commits on Jan 26, 2024

• add minimap process

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Commits on Jan 27, 2024

• added minimap full processs

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Commits on Jan 28, 2024

• add filter to hic_mapping

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Commits on Jan 29, 2024

• add hic_minimap

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• add hic_mapping

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Commits on Jan 30, 2024

• add config

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• add filter_five_end

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• Merge branch 'galaxy_dev' into hic_opt

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• fixed linting

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• change to spaces

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• invoke java.math

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• avoid juicer for rapid

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• avoid juicer for rapid

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Commits on Jan 31, 2024

• consolidate container

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• consolidate container

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• switch to larger server to test

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• switch to larger server to test

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• Update ci.yml - increase the runner size

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• Switch back to default runner. We can switch back if necessary when the test can pass on the farm.

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Commits on Feb 1, 2024

• add tmp folder for fastk

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• changed modules

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• changed modules

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• changed subset files

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• using mulled

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Commits on Feb 2, 2024

• add nf-core download to ci

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• add nf-core download to ci

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Commits on Feb 5, 2024

• removed nf download

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  0b27d74

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Testing something

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• Merge pull request #233 from sanger-tol/dp24-testing

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Commits on Feb 6, 2024

• Updates to CI

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• Updates to CI

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• Updates to CI

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• Updates to CI

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• Updates to CI

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• Updates to CI

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• Updates to CI

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• Updates to CI

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  f1e47f7

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• Attempting to get path

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• Attempting to get path

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• Merge pull request #234 from sanger-tol/dp24_ci_updates

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