Updates to the oncomplete and remove snapshot closes #263

sanger-tol · Feb 19, 2024 · a1820cf · a1820cf
1 parent 36d345c
commit a1820cf
Showing 1 changed file with 1 addition and 6 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -41,7 +41,7 @@ process {
 
     // Files to be used for pretext, likely to be deleted once the hic workflow is complete.
     // .bed, .hr.pretext, .lr.pretext, needs centromere}
-    withName: 'REFORMAT_INTERSECT|SEQTK_CUTN|GAP_LENGTH|PRETEXT_INGEST_HIRES|PRETEXT_INGEST_SNDRD|COOLER_ZOOMIFY|COV_FOLDER|UCSC_BEDGRAPHTOBIGWIG|BED2BW_NORMAL|BED2BW_LOG|EXTRACT_TELO|JUICER_TOOLS_PRE|SNAPSHOT_SRES|SNAPSHOT_HRES|PRETEXT_GRAPH' {
+    withName: 'REFORMAT_INTERSECT|SEQTK_CUTN|GAP_LENGTH|PRETEXT_INGEST_HIRES|PRETEXT_INGEST_SNDRD|COOLER_ZOOMIFY|COV_FOLDER|UCSC_BEDGRAPHTOBIGWIG|BED2BW_NORMAL|BED2BW_LOG|EXTRACT_TELO|JUICER_TOOLS_PRE|SNAPSHOT_SRES|PRETEXT_GRAPH' {
         publishDir = [
             path: { "${params.outdir}/hic_files" },
             mode: params.publish_dir_mode,
@@ -309,11 +309,6 @@ process {
         ext.prefix      = { "${meta.id}_normal" }
     }
 
-    withName: "SNAPSHOT_HRES" {
-        ext.args        = { "--sequences '=full' --resolution 1440 --texutureBuffer 1G" }
-        ext.prefix      = { "${meta.id}_hr" }
-    }
-
     withName: JUICER_TOOLS_PRE {
         ext.juicer_tools_jar    = "juicer_tools.1.8.9_jcuda.0.8.jar"
         ext.juicer_jvm_params   = "-Xms1g -Xmx36g"