Updating the paths in files

sanger-tol · Sep 19, 2023 · 6976bf2 · 6976bf2
1 parent 27ea3bc
commit 6976bf2
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Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/assets/local_testing/nxOscDF5033.yaml b/assets/local_testing/nxOscDF5033.yaml
@@ -5,11 +5,10 @@ assembly:
   classT: nematode
   asmVersion: 1
   gevalType: DTOL
-reference_file: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta
-#/lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta
+reference_file: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta
 assem_reads:
-  pacbio: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/
-  hic: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/full/
+  pacbio: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/
+  hic: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/full/
   supplementary: path
 alignment:
   data_dir: /lustre/scratch123/tol/resources/treeval/gene_alignment_data/

diff --git a/assets/local_testing/nxOscSUBSET.yaml b/assets/local_testing/nxOscSUBSET.yaml
@@ -5,11 +5,11 @@ assembly:
   classT: nematode
   asmVersion: 1
   gevalType: DTOL
-reference_file: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/assembly/draft/SUBSET_genome/Oscheius_SUBSET.fasta
+reference_file: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_SUBSET/assembly/draft/SUBSET_genome/Oscheius_SUBSET.fasta
 #/lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta
 assem_reads:
-  pacbio: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/genomic_data/pacbio/
-  hic: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/subset/
+  pacbio: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_SUBSET/genomic_data/pacbio/
+  hic: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/subset/
   supplementary: path
 alignment:
   data_dir: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/gene_set/