This should work

sanger-tol · Sep 15, 2023 · 123e1bc · 123e1bc
1 parent c8e7dab
commit 123e1bc
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/lib/TreeValProject.groovy b/lib/TreeValProject.groovy
@@ -1,3 +1,5 @@
+import java.time.OffsetDateTime
+
 class TreeValProject {
     //
     // Generates a small summary containing context for the input files
@@ -7,13 +9,15 @@ class TreeValProject {
 
     public static void summary(workflow, params, metrics, log) {
 
+        def date_completed = OffsetDateTime.now()
+
         def input_data = [:]
         input_data['version']           = NfcoreTemplate.version( workflow )
         input_data['runName']           = workflow.runName
         input_data['session_id']        = workflow.sessionId
-        input_data['duration']          = 'CANNOT BE CALCULATED'
+        input_data['duration']          = Duration.between( workflow.start, date_completed )
         input_data['DateStarted']       = workflow.start
-        input_data['DateCompleted']     = new Date().format("yyyy-MM-dd HH:mm:ss.SSSZ")
+        input_data['DateCompleted']     = date_completed
         input_data['entry']             = params.entry
 
         input_data['input_yaml']        = params.input