Code

Formatting custom SAM header#21

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tkchafin merged 17 commits intodevsanger-tol/insdcdownload:devfrom samtools_reheadersanger-tol/insdcdownload:samtools_reheaderCopy head branch name to clipboardJul 5, 2024

+175-10

Commits

Commits on Jun 25, 2024

• download_genome.nf now emits assembly report

  tkchafin

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  4f73bfd

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• ncbi_download now emits ftp source and saves to outdir

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  bcd4275

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• added local module to build custom sam header

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  1d73f58

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Commits on Jun 26, 2024

• added subworkflow to build ENA-compliant custom SAM header

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  12ee6a8

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• fix minor typos

  tkchafin

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  822760d

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• Merge pull request #20 from tkchafin/samtools_reheader

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  2bea0fc

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Commits on Jun 27, 2024

• Update modules/local/build_sam_header.nf

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  tkchafin

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  muffato

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  2a19a8e

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• fix error in @sq lines (AM -> AN)

  tkchafin

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  9195817

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• write full path to SOURCE

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  bba6378

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• remove publishing of intermediate .dict file

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  096ae1c

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• remove redundant second PREPARE_HEADER call

  tkchafin

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  b1958d8

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• Remove no longer needed meta.id formatting

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  muffato

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  01d5dd4

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• fix id -> meta.id

  tkchafin

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  3886d04

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• simplify join operations

  tkchafin

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  0e1500a

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• remove redundant publishDir in SAMTOOLS_DICT

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  cbd4c27

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• fix failed test after simplifying joined

  tkchafin

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  b591723

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Commits on Jul 3, 2024

• implement new AN: field resolution

  tkchafin

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  5258712

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