Merge pull request #21 from sanger-tol/samtools_reheader #10
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| name: sanger-tol LSF full size tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run LSF full size tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Sets env vars for push | |
| run: | | |
| echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV | |
| if: github.event_name == 'push' | |
| - name: Sets env vars for workflow_dispatch | |
| run: | | |
| echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV | |
| if: github.event_name == 'workflow_dispatch' | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| revision: ${{ env.REVISION }} | |
| workdir: ${{ secrets.TOWER_WORKDIR_PARENT }}/work/${{ github.repository }}/work-${{ env.REVISION }} | |
| parameters: | | |
| { | |
| "outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ env.REVISION }}", | |
| } | |
| profiles: test_full,sanger,singularity,cleanup | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |