Merge pull request #30 from sanger-tol/dp24_spelling

conf/test_full.config
sanger-tol · Jul 18, 2024 · b72aaac · b72aaac
2 parents 6c3cf57 + c51a3ac
commit b72aaac
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -23,9 +23,9 @@ params {
     max_time    = '6.h'
 
     sample      = "testing"
-    input       = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta"
-    longread    = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/"
-    cram        = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima/full/"
+    input       = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValTinyData/assembly/draft/grTriPseu1.fa"
+    longread    = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValTinyData/genomic_data/pacbio/"
+    cram        = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValTinyData/genomic_data/hic-arima/"
     sample      = "CurationPretextTest"
     teloseq     = "TTAGGG"
     aligner     = "bwamem2"

diff --git a/nextflow.config b/nextflow.config
@@ -160,7 +160,8 @@ profiles {
         executor.cpus          = 16
         executor.memory        = 60.GB
     }
-    test        { includeConfig 'conf/test.config'   }
+    test        { includeConfig 'conf/test.config'      }
+    test_full   { includeConfig 'conf/test_full.config' }
 }
 
 // Export these variables to prevent local Python/R libraries from conflicting with those in the container