Update for testing

sanger-tol · Sep 20, 2023 · 791443b · 791443b
1 parent 8e3923c
commit 791443b
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -38,7 +38,7 @@ jobs:
       - name: Download test data
         # Download A fungal test data set that is full enough to show some real output.
         run: |
-          curl https://dp24.cog.sanger.ac.uk/TreeValTinyData.tar.gz | tar xzf -
+          curl https://tolit.cog.sanger.ac.uk/test-data/TreeValTinyData.tar.gz | tar xzf -
 
       - name: Run MAPS_ONLY pipeline with test data
         # Remember that you can parallelise this by using strategy.matrix

diff --git a/conf/test_full.config b/conf/test_full.config
@@ -21,10 +21,10 @@ params {
     // TODO nf-core: Give any required params for the test so that command line flags are not needed
     input = 'https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_full_illumina_amplicon.csv'
 
-    input       = "/home/runner/work/curationpretext/curationpretext/TreeValTinyData/assembly/draft/grTriPseu1.fa"
+    input       = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta"
     outdir      = "./results"
-    pacbio      = "/home/runner/work/curationpretext/curationpretext/TreeValTinyData/genomic_data/pacbio/"
-    cram        = "/home/runner/work/curationpretext/curationpretext/TreeValTinyData/genomic_data/hic-arima/"
+    pacbio      = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/"
+    cram        = "/lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/full/"
     sample      = "CurationPretextTest"
     teloseq     = "TTAGGG"
 }