Adding CHANGELOG

sanger-tol · Oct 2, 2023 · 3fcf1bb · 3fcf1bb
1 parent 209d622
commit 3fcf1bb
Showing 1 changed file with 21 additions and 20 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 Initial release of sanger-tol/curationpretext, created with the [sager-tol](https://nf-co.re/) template.
 
 ### `Added`
+
 - Subworkflow to generate tracks containing telomeric sites.
 - Subworkflow to generate Pretext maps and images
 - Subworkflow to generate repeat density tracks.
@@ -20,26 +21,26 @@ Initial release of sanger-tol/curationpretext, created with the [sager-tol](http
 
 Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference.
 
-| Module                                 | Old Version | New Versions     |
-| -------------------------------------- | ----------- | ---------------- |
-| bamtobed_sort ( bedtools + samtools )  | -           | 2.31.0 + 1.17    |
-| bedtools                               | -           | 2.31.0           |
-| cram_filter_align_bwamem2_fixmate_sort | -           |                  |
-| ^ ( samtools + bwamem2 ) ^             | -           | 1.16.1 + 2.2.1   |
-| extract_cov_id ( coreutils )           | -           | 9.1              |
-| extract_repeat ( perl )                | -           | 5.26.2           |
-| extract_telo ( coreutils )             | -           | 9.1              |
-| find_telomere_regions ( gcc )          | -           | 7.1.0            |
-| find_telomere_windows ( java-jdk )     | -           | 8.0.112          |
-| gap_length ( coreutils )               | -           | 9.1              |
-| generate_cram_csv ( samtools )         | -           | 1.17             |
-| get_largest_scaff ( coreutils )        | -           | 9.1              |
-| gnu-sort                               | -           | 8.25             |
-| pretextmap + samtools                  | -           | 0.1.9 + 1.17     |
-| seqtk                                  | -           | 1.4              |
-| tabix                                  | -           | 1.11             |
-| ucsc                                   | -           | 377              |
-| windowmasker (blast)                   | -           | 2.14.0           |
+| Module                                 | Old Version | New Versions   |
+| -------------------------------------- | ----------- | -------------- |
+| bamtobed_sort ( bedtools + samtools )  | -           | 2.31.0 + 1.17  |
+| bedtools                               | -           | 2.31.0         |
+| cram_filter_align_bwamem2_fixmate_sort | -           |                |
+| ^ ( samtools + bwamem2 ) ^             | -           | 1.16.1 + 2.2.1 |
+| extract_cov_id ( coreutils )           | -           | 9.1            |
+| extract_repeat ( perl )                | -           | 5.26.2         |
+| extract_telo ( coreutils )             | -           | 9.1            |
+| find_telomere_regions ( gcc )          | -           | 7.1.0          |
+| find_telomere_windows ( java-jdk )     | -           | 8.0.112        |
+| gap_length ( coreutils )               | -           | 9.1            |
+| generate_cram_csv ( samtools )         | -           | 1.17           |
+| get_largest_scaff ( coreutils )        | -           | 9.1            |
+| gnu-sort                               | -           | 8.25           |
+| pretextmap + samtools                  | -           | 0.1.9 + 1.17   |
+| seqtk                                  | -           | 1.4            |
+| tabix                                  | -           | 1.11           |
+| ucsc                                   | -           | 377            |
+| windowmasker (blast)                   | -           | 2.14.0         |
 
 ### Fixed