Changing version command, confirmed locally and in container

sanger-tol · Dec 9, 2024 · 2764466 · 2764466
1 parent ff74ae3
commit 2764466
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/local/extract_repeat.nf b/modules/local/extract_repeat.nf
@@ -25,7 +25,7 @@ process EXTRACT_REPEAT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        perl: \$(echo \$(perl --version 2>&1 | grep -oP '\(v\K[^\)]+')
+        perl: \$(echo \$(perl --version 2>&1 | grep -oP '\(\K[^\)]+')
         extract_repeat.pl: $VERSION
     END_VERSIONS
     """
@@ -38,7 +38,7 @@ process EXTRACT_REPEAT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        perl: \$(echo \$(perl --version 2>&1) | sed 's/^.*perl //; s/Using.*\$//')
+        perl: \$(echo \$(perl --version 2>&1 | grep -oP '\(\K[^\)]+')
         extract_repeat.pl: $VERSION
     END_VERSIONS
     """