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Prettier docs
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DLBPointon committed Sep 21, 2023
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Expand Up @@ -25,11 +25,11 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
- `coverage.bigWig`: Graph file containing coverage data. For Pretext ingestion.
- `halfcoverage.bigWig`: Graph file containing coverage data where coverage is equal to half the max.
- `maxcoverage.bigWig`: Graph file containing coverage data where coverage is max.
- `*_gap.bedgraph`: Bed graph with locations of gaps in the sequence. For Pretext ingestion.
- `*_gap.bedgraph`: Bed graph with locations of gaps in the sequence. For Pretext ingestion.
- `*_telomere.bed`: Bed file containing telomeric motif site.
- `*_telomere.bedgraph`: Bed graph with locations of telomeric motif. For Pretext ingestion.
- `*_repeat_density.bigWig`: Graph file containing relative repeat density across the genome. For Pretext ingestion.
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The accessory files are generated in the `ALL_FILES` sub workflow, and are generated in order to be ingested into the pretext files which is detailed on the pipelines website.

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