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Blastn#81

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alxndrdiaz wants to merge 69 commits intodevsanger-tol/blobtoolkit:devfrom blastnsanger-tol/blobtoolkit:blastnCopy head branch name to clipboard

+752-27

Commits

Commits on May 23, 2023

• added chunk_busco module

  

  Alexander Ramos-Diaz

  committed
  b2e2e06

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Commits on Jun 2, 2023

• added diamond_blastx module

  alxndrdiaz

  committed
  a833404

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• added blastx_cols and blastx_outext

  alxndrdiaz

  committed
  94b44c9

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• fix DIAMOND_BLASTX path

  alxndrdiaz

  committed
  46ae681

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Commits on Jun 3, 2023

• added module BLOBTOOLKIT_UNCHUNK

  alxndrdiaz

  committed
  b5594c4

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• diamond_blastx data for test_full

  alxndrdiaz

  committed
  4c3e944

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Commits on Jun 8, 2023

• removed log files

  alxndrdiaz

  committed
  40c212a

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• fix path to uniprot_blastx

  alxndrdiaz

  committed
  0ae6480

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• renamed files in RUN_BLASTX subworkflow

  alxndrdiaz

  committed
  a7502f0

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• use meta and meta2

  alxndrdiaz

  committed
  8de106a

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• use names in RUN_BLASTX input channels

  alxndrdiaz

  committed
  5466144

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• added uniprot_blastx

  alxndrdiaz

  committed
  d667473

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• merge blastx results in BlobDir

  

  Alexander Ramos-Diaz

  committed
  49cb8bf

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• minimum Nextflow version 23.04.1

  alxndrdiaz

  committed
  abc2b97

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• update uniprot databases

  alxndrdiaz

  committed
  7bd7873

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Commits on Jun 9, 2023

• updated paths to uniprot databases

  alxndrdiaz

  committed
  cec0022

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Commits on Jun 19, 2023

• Update conf/test.config

  Show description for ddb9645
  

  alxndrdiaz

  and

  priyanka-surana

  authored
  ddb9645

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• use new names for uniprot databases

  alxndrdiaz

  committed
  d814e5f

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• Update modules/local/blobtoolkit/chunk.nf

  Show description for 3bc14aa
  

  alxndrdiaz

  and

  priyanka-surana

  authored
  3bc14aa

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• update names for uniprot databases

  alxndrdiaz

  committed
  72f040c

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• fix description

  alxndrdiaz

  committed
  0dbc9b6

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• update uniprot database names

  alxndrdiaz

  committed
  c8bef6c

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• check params.blastp and params.blastx

  alxndrdiaz

  committed
  1c9f9c4

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• independent channels in RUN_BLASTX

  alxndrdiaz

  committed
  8f3f719

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Commits on Jun 22, 2023

• added module NOHIT_LIST

  alxndrdiaz

  committed
  0c61987

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• added subworkflow RUN_BLASTN

  alxndrdiaz

  committed
  8c3936a

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• NOHIT_LIST parameters

  alxndrdiaz

  committed
  5c6365a

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• include RUN_BLASTN subworkflow

  alxndrdiaz

  committed
  0a988e4

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• use shell block

  alxndrdiaz

  committed
  20a4784

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• update RUN_BLASTN input

  alxndrdiaz

  committed
  d9411a0

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• use script from bin

  alxndrdiaz

  committed
  c61f987

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Commits on Jun 26, 2023

• installed module seqtk

  alxndrdiaz

  committed
  3d9ba45

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Commits on Jun 27, 2023

• include SEQTK_SUBSEQ module

  alxndrdiaz

  committed
  a1064bc

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• added SEQTK_SUBSEQ version

  alxndrdiaz

  committed
  59edf87

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• install module BLAST_BLASTN

  alxndrdiaz

  committed
  ab5a036

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Commits on Jul 11, 2023

• blastn database mMelMel3.1

  

  Alexander Ramos-Diaz

  committed
  d8afe33

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• include BLASTN module and nucleotide database

  alxndrdiaz

  committed
  2811438

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• remove typo

  alxndrdiaz

  committed
  e5c1bbf

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Commits on Jul 12, 2023

• use combine instead of join

  alxndrdiaz

  committed
  e6e1674

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• BLAST_BLASTN args

  alxndrdiaz

  committed
  297bfcd

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• single quotes in BLAST_BLASTN args

  alxndrdiaz

  committed
  afcd65b

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• rename outpur channel

  alxndrdiaz

  committed
  4c5c068

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• include chunk module

  alxndrdiaz

  committed
  f8fffa3

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Commits on Jul 13, 2023

• include unchunk module

  alxndrdiaz

  committed
  4821996

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• add blastn results to BlobDir

  alxndrdiaz

  committed
  3f4bb20

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• RUN_BLASTX description

  alxndrdiaz

  committed
  0e3f6ba

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• RUN_BLASTN description

  alxndrdiaz

  committed
  54413ec

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• change prefix

  alxndrdiaz

  committed
  c4a25d4

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Commits on Jul 18, 2023

• new output: taxon_id

  alxndrdiaz

  committed
  3b2743c

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Commits on Jul 19, 2023

• local BLAST module

  alxndrdiaz

  committed
  43aaf96

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• args for BLASTN module

  alxndrdiaz

  committed
  79ae90d

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• use local BLASTN module

  alxndrdiaz

  committed
  67694df

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• add taxon_id input

  alxndrdiaz

  committed
  ded1145

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Commits on Aug 1, 2023

• use -negative_taxids

  alxndrdiaz

  committed
  7aef344

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• conditional blastn search

  alxndrdiaz

  committed
  65df189

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• ignore template_strings check

  alxndrdiaz

  committed
  5ab0f72

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• ignore merge_markers check

  alxndrdiaz

  committed
  00983c6

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• run prettier

  alxndrdiaz

  committed
  2197033

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Commits on Aug 9, 2023

• removed schema_ignore_params

  alxndrdiaz

  committed
  1454bb3

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• add schema validation options

  alxndrdiaz

  committed
  30860d3

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• overwritten with template file

  alxndrdiaz

  committed
  2bb54a4

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Commits on Aug 10, 2023

• ignore blastn database files

  alxndrdiaz

  authored
  970a5f0

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• update path to ignore

  alxndrdiaz

  authored
  d77944d

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• use paths instead of paths-ignore

  alxndrdiaz

  authored
  3c501ac

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• update local path

  alxndrdiaz

  authored
  cf71ade

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• remove path to ignore

  alxndrdiaz

  authored
  ee02484

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• ignore blastn database files

  alxndrdiaz

  authored
  d3e1258

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Commits on Sep 1, 2023

• add blastn full test files

  

  Alexander Ramos-Diaz

  committed
  cea0576

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• Update .editorconfig

  Show description for 5c441db
  alxndrdiaz

  authored
  5c441db

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