push busco results

sanger-tol · Dec 21, 2023 · f0a74af · f0a74af
1 parent c45daa9
commit f0a74af
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 2 deletions.
diff --git a/bin/update_versions.py b/bin/update_versions.py
@@ -35,8 +35,6 @@ def update_meta(meta, software):
     del new_dict["sanger-tol/blobtoolkit"]
     infile["settings"]["software_versions"] = new_dict
 
-    del infile["settings"]["tmp"]
-
     return infile
 
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -64,6 +64,11 @@ process {
         scratch = true
         // Overridden in the test profile, see at the end of this file
         ext.args = "--force"
+        publishDir = [
+            path: { "${params.outdir}/BUSCO" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals("versions.yml") ? null : filename }
+        ]
     }
 
     withName: "DIAMOND_BLASTP" {
@@ -173,6 +178,11 @@ profiles {
             withName: BUSCO {
                 // Note: BUSCO *must* see the double-quotes around the parameters
                 ext.args = '--force --metaeuk_parameters \'"-s=2"\' --metaeuk_rerun_parameters \'"-s=2"\''
+                publishDir = [
+                    path: { "${params.outdir}/BUSCO" },
+                    mode: params.publish_dir_mode,
+                    saveAs: { filename -> filename.equals("versions.yml") ? null : filename }
+                ]
             }
         }
     }