prettier fix

sanger-tol · Sep 27, 2023 · dfa2b93 · dfa2b93
1 parent 021565a
commit dfa2b93
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Showing 2 changed files with 14 additions and 38 deletions.
diff --git a/docs/usage.md b/docs/usage.md
@@ -43,7 +43,7 @@ sample3,ont,ont.cram
 | Column     | Description                                                                                                                                                                           |
 | ---------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
 | `sample`   | Custom sample name. This entry will be identical for multiple sequencing libraries/runs from the same sample. Spaces in sample names are automatically converted to underscores (\_). |
-| `datatype` | Type of sequencing data. Must be one of `hic`, `illumina`, `pacbio`, `pacbio_clr` or `ont`.                                                                                                        |
+| `datatype` | Type of sequencing data. Must be one of `hic`, `illumina`, `pacbio`, `pacbio_clr` or `ont`.                                                                                           |
 | `datafile` | Full path to read data file.                                                                                                                                                          |
 
 An [example samplesheet](https://raw.githubusercontent.com/sanger-tol/blobtoolkit/main/assets/test/samplesheet.csv) has been provided with the pipeline.

diff --git a/modules.json b/modules.json
@@ -8,87 +8,63 @@
                     "busco": {
                         "branch": "master",
                         "git_sha": "6d6552cb582f56b6101c452e16ee7c23073f91de",
-                        "installed_by": [
-                            "modules"
-                        ],
+                        "installed_by": ["modules"],
                         "patch": "modules/nf-core/busco/busco.diff"
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
                         "git_sha": "05c280924b6c768d484c7c443dad5e605c4ff4b4",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "diamond/blastp": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "fastawindows": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "goat/taxonsearch": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "gunzip": {
                         "branch": "master",
                         "git_sha": "e06548bfa36ee31869b81041879dd6b3a83b1d57",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "minimap2/align": {
                         "branch": "master",
                         "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "mosdepth": {
                         "branch": "master",
                         "git_sha": "ebb27711cd5f4de921244bfa81c676504072d31c",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "a6e11ac655e744f7ebc724be669dd568ffdc0e80",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "samtools/fasta": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "samtools/index": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "samtools/view": {
                         "branch": "master",
                         "git_sha": "3ffae3598260a99e8db3207dead9f73f87f90d1f",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     }
                 }
             },
@@ -97,4 +73,4 @@
             }
         }
     }
-}
+}