forgot to add busco diff

sanger-tol · Sep 17, 2023 · c3486ae · c3486ae
1 parent d4b93da
commit c3486ae
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Showing 2 changed files with 18 additions and 31 deletions.
diff --git a/modules/nf-core/busco/busco.diff b/modules/nf-core/busco/busco.diff
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -10,10 +10,7 @@
             "type": "object",
             "fa_icon": "fas fa-terminal",
             "description": "Define where the pipeline should find input data and save output data.",
-            "required": [
-                "input",
-                "outdir"
-            ],
+            "required": ["input", "outdir"],
             "properties": {
                 "input": {
                     "type": "string",
@@ -61,11 +58,7 @@
             "type": "object",
             "fa_icon": "fas fa-dna",
             "description": "Reference genome related files and options required for the workflow.",
-            "required": [
-                "taxon",
-                "accession",
-                "fasta"
-            ],
+            "required": ["taxon", "accession", "fasta"],
             "properties": {
                 "taxon": {
                     "type": "string",
@@ -90,10 +83,7 @@
             "type": "object",
             "fa_icon": "fas fa-database",
             "description": "Define the location and parameters to work with databases.",
-            "required": [
-                "uniprot",
-                "taxdump"
-            ],
+            "required": ["uniprot", "taxdump"],
             "properties": {
                 "taxa_file": {
                     "type": "string",
@@ -115,15 +105,7 @@
                 },
                 "blastp_outext": {
                     "type": "string",
-                    "enum": [
-                        "blast",
-                        "xml",
-                        "txt",
-                        "daa",
-                        "sam",
-                        "tsv",
-                        "paf"
-                    ],
+                    "enum": ["blast", "xml", "txt", "daa", "sam", "tsv", "paf"],
                     "description": "Extension (file format) of the output file from Diamond BLAST.",
                     "fa_icon": "fas fa-file-circle-question",
                     "default": "txt"
@@ -251,14 +233,7 @@
                     "description": "Method used to save pipeline results to output directory.",
                     "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
                     "fa_icon": "fas fa-copy",
-                    "enum": [
-                        "symlink",
-                        "rellink",
-                        "link",
-                        "copy",
-                        "copyNoFollow",
-                        "move"
-                    ],
+                    "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
                     "hidden": true
                 },
                 "email_on_fail": {
@@ -357,4 +332,4 @@
             "$ref": "#/definitions/generic_options"
         }
     ]
-}
+}