Switched to the default btk biocontainers because the pacbio one is gone

All we need is Python and the yaml package
sanger-tol · Jul 1, 2024 · aef0532 · aef0532
1 parent 075dce3
commit aef0532
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/blobtoolkit/updatemeta.nf b/modules/local/blobtoolkit/updatemeta.nf
@@ -5,7 +5,7 @@ process BLOBTOOLKIT_UPDATEMETA {
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
         exit 1, "BLOBTOOLKIT_UPDATEMETA module does not support Conda. Please use Docker / Singularity / Podman instead."
     }
-    container "docker.io/pacificbiosciences/pyyaml:5.3.1"
+    container "docker.io/genomehubs/blobtoolkit:4.3.9"
 
     input:
     tuple val(meta), path(input)