Updated CAT_CAT module that preserves the file extension

This means that .fastq.gz will remain .fastq.gz and can then match the condition to bypass the SAMTOOLS_FASTA process. There is a pull-request for this, nf-core/modules#4230
sanger-tol · Jan 12, 2024 · 7527e7a · 7527e7a
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commit 7527e7a
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Showing 3 changed files with 46 additions and 2 deletions.
diff --git a/modules.json b/modules.json
@@ -20,7 +20,8 @@
                     "cat/cat": {
                         "branch": "master",
                         "git_sha": "d593e8f6b7d1bbbb2acf43a4b9efeeac8d6720f2",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/cat/cat/cat-cat.diff"
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",

diff --git a/modules/nf-core/cat/cat/cat-cat.diff b/modules/nf-core/cat/cat/cat-cat.diff
diff --git a/modules/nf-core/cat/cat/main.nf b/modules/nf-core/cat/cat/main.nf