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true is not needed
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@muffato
muffato committed Jun 5, 2024
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Expand Up @@ -70,7 +70,7 @@ BUSCO results generated by the pipeline (all BUSCO lineages that match the claas

### Read alignments

Read alignments in BAM format -- only if the pipeline is run with `--align true`.
Read alignments in BAM format -- only if the pipeline is run with `--align`.

<details markdown="1">
<summary>Output files</summary>
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