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motion regressors #2

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motion regressors #2

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salma1601
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Add motion as nuisance regressors in GLM

ainafp and others added 30 commits May 22, 2015 09:53
@ainafp
design matrix for asl to test
dc8b27b
@ainafp
added plotting criteria to see cnvergence of parameters
a213ec2
@ainafp
adding physio prior to VEM
2fa8ce2
@ainafp
adding prior to the vem
acc781f
@ainafp
changing covariance matrix
b91b653
@ainafp
added vem asl physio
dcb1bed
@ainafp
pyhrf#98 added physio prior... still work in progress.
8d28572
@ainafp
pyhrf#98 added physio prior... still work in progress.
c74b231
@ainafp
pyhrf#99 code for ASL to run with AINSI DB. Work in progress...
ab9f47a
@ainafp
pyhrf#99 code for ASL to run with AINSI DB. To be refactored
807cade
@ainafp
physio vem for asl
8214eb8
@ainafp
physio vem for asl
0d23e90
@ainafp
trying things for the physio version
34ee57c
@ainafp
small changes to generate GLM regressor weights
9870d6b
@ainafp
fixed some bugs
c751c39
@ainafp
some changes in the plotting of GLM results
cb01f41
@ainafp
scenario duration modified
159c7f6
@ainafp
test
06e1a62
@ainafp
added plotting criteria to see cnvergence of parameters
4916df8
@ainafp
adding physio prior to VEM
c6f3839
@ainafp
adding prior to the vem
6684b6d
@ainafp
changing covariance matrix
20495fb
@ainafp
added vem asl physio
d6c5dc0
@ainafp
pyhrf#98 added physio prior... still work in progress.
9f0681e
@ainafp
pyhrf#98 added physio prior... still work in progress.
d686251
@ainafp
pyhrf#99 code for ASL to run with AINSI DB. Work in progress...
c775d0b
@ainafp
pyhrf#99 code for ASL to run with AINSI DB. To be refactored
4f23df2
@ainafp
physio vem for asl
2918517
@ainafp
physio vem for asl
1534d78
@ainafp
trying things for the physio version
de5f936
ainafp and others added 30 commits May 22, 2015 09:53
@ainafp
small changes to generate GLM regressor weights
7703148
@ainafp
fixed some bugs
94dc581
@ainafp
some changes in the plotting of GLM results
c1188d8
@ainafp
scenario duration modified
d63be0d
@ainafp
test
be470be
@ainafp
[pyhrf#117] trying a diferent covariance matrix for the prior of the HRF
402336f
@ainafp
GLM for ASL based on nipy
7acbcce
@ainafp
removed interactions contrasts
240e777 
 Veuillez saisir le message de validation pour vos modifications. Les lignes
@ainafp
scripts being used for checking code
1d627f5
@ainafp
[pyhrf#119, pyhrf#98] playing with the bold VEM
c1ca75e
@ainafp
[pyhrf#119] Tests on MCMC BOLD version
d1ec001
@ainafp
[pyhrf#119 pyhrf#98] fixing design matrix and ASL physio with constra…
f7332e5 
…ints
@ainafp
adjusting parameters
73a7722
@ainafp
pyhrf#98 adding scripts for parcellation and comparison in simulated …
779a520 
…data of MCMC and VEM
@ainafp
last changes parcellation
a967861
@ainafp
g not normalized, so no inconsistencies with omega
cccf272
@ainafp
copy() added to stopping criteria CG and AH update that were not done…
0e34b5b 
… correctly
@ainafp
Updated scripts with correct TR, calling the last version of the code…
00add04 
… (vectorized and faster)
@ainafp
Balloon responses not normalized
31cd4f1
@ainafp
Added physiological responses and changed levels of activation
572eef3
@ainafp
Changed level of logging
4262e50
@ainafp
Added some outputs and prior types
858a761
@ainafp
copy() for stopping criteria, block design conditions
4f72896
@ainafp
updates in expectation and maximization functions
cc60ac3
@ainafp
New functions vectorized and faster. With this, the issue of the bloc…
323a78b 
…k design is fixed
@ainafp
script to analyse HEROES database with JDE
092b0e0
@ainafp
expectation and maximization functions vectorized and fast for BOLD a…
616178d 
…nd ASL
@ainafp
Salma's locator file for analysing data
4a2bd93
@ainafp
scripts to make masks and parcellations
121b90f
@ainafp
Ugly commit to have everything in the repo. To clean in next commit. …
bc0249f 
…This is the state of this repo before cleaning and merging with all the things of Thomas
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2 participants
@salma1601 @ainafp