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  • BII A*STAR
  • Singapore
  • 13:10 (UTC +08:00)

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sagizty/README.md

Hi there 👋

iMVR group at Electrical and Computer Engineering (ECE), National University of Singapore (NUS), Singapore

CVPD group at Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore

School of Biological Science and Medical Engineering, Beihang University, China

Anurag's GitHub stats

Recent Works:

Tianyi Zhang, Yunlu Feng, Yu Zhao, Guangda Fan, Aiming Yang, Shangqing Lyu, Peng Zhang, Fan Song, Chenbin Ma, Yangyang Sun, Youdan Feng, and Guanglei Zhang, “MSHT: Multi-stage hybrid transformer for the ROSE image analysis of pancreatic cancer,” IEEE Journal of Biomedical and Health Informatics, 2023, 27(4), pp.1946 - 1957.

Tianyi Zhang, Youdan Feng, Yu Zhao, Yunlu Feng, Yanli Lei, Nan Ying, Fan Song, Zhiling Yan, Yufang He, Aiming Yang, and Guanglei Zhang, “SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification,” Computer Methods and Programs in Biomedicine, 244, p. 107969.

Tianyi Zhang, Zhiling Yan, Chunhui li, Nan Ying, Yanli Lei, Shangqing Lyu, Yunlu Feng, Yu Zhao, Guanglei Zhang, “CellMix: A general instance relationship based method for data augmentation towards pathology image analysis,” arXiv:2301.11513, 2023. (under-review)

Tianyi Zhang, Shangqing Lyu, Yanli Lei, Sicheng Chen, Nan Ying, Yufang He, Yu Zhao, Yunlu Feng, Guanglei Zhang, “PuzzleTuning: explicit bridge pathological and natural image with puzzles,” arXiv: 2311.06712, 2023. (under-review)

Zeyu Liu*, Tianyi Zhang*, Yufang He, Yunlu Feng, Yu Zhao, and Guanglei Zhang, “Generating Progressive Images from Pathological Transitions via Diffusion Model,” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp. 308-318, 2024.

Nan Ying*, Yanli Lei*, Tianyi Zhang*, Shangqing Lyu, Chunhui Li, Sicheng Chen, Zheyu Liu, and Guanglei Zhang, “CPIA Dataset: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training”, arxiv 2310.17902 (under-review)

Yufang He, Zeyu Liu, Mingxin Qi, Shengwei Ding, Peng Zhang, Fan Song, Chenbin Ma, Huijie Wu, Ruxin Cai, Youdan Feng, Haonan Zhang, Tianyi Zhang, Guanglei Zhang, “PST-Diff: Achieving High-consistency Stain Transfer by Diffusion Models with Pathological and Structural Constraints,” IEEE Transactions on Medical Imaging, 2024, 43(10), pp.3634-3647.

Pinned Loading

  1. PuzzleTuning PuzzleTuning Public

    The official repo of PuzzleTuning: Explicitly Bridge Pathological and Natural Image with Puzzles (arXiv: 2311.06712)

    Jupyter Notebook 12 3

  2. Multi-Stage-Hybrid-Transformer Multi-Stage-Hybrid-Transformer Public

    Official release of MSHT: Multi-stage Hybrid Transformer for the ROSE Image Analysis of Pancreatic Cancer https://ieeexplore.ieee.org/document/10006398

    Jupyter Notebook 71 7

  3. CellMix CellMix Public

    Official release of CellMix: A general instance relationship based method for data augmentation towards pathology image analysis (arXiv:2301.11513)

    Jupyter Notebook 10

  4. MIL-SI MIL-SI Public

    Official release of Shuffle Instances-based Vision Transformer for Pancreatic Cancer ROSE Image Classification

    Jupyter Notebook 20 3

  5. VPT VPT Public

    Unofficial code for VPT(Visual Prompt Tuning) paper of arxiv 2203.12119

    Python 160 10

  6. Insight Insight Public

    learning materials for PyTorch beginners

    Jupyter Notebook 163 20