Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merge 1.0.0a2 #58

Merged
merged 22 commits into from
Sep 19, 2023
Merged

Merge 1.0.0a2 #58

merged 22 commits into from
Sep 19, 2023

Commits on Jul 4, 2023

  1. added remove_hvg_marker_genes function 

    removes marker genes of other cell types from the highly variable column for each view
    @demian1
    demian1 authored Jul 4, 2023
    Configuration menu
    Copy the full SHA
    537540f View commit details
    Browse the repository at this point in the history

Commits on Jul 27, 2023

  1. keep psbulk stats when converting to MuData

    @demian1
    demian1 committed Jul 27, 2023
    Configuration menu
    Copy the full SHA
    7a8c5db View commit details
    Browse the repository at this point in the history

Commits on Sep 6, 2023

  1. fix typos, clarify text, update diagrams

    dbdimitrov committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    90840f7 View commit details
    Browse the repository at this point in the history

  2. add links to readme, correct title

    dbdimitrov committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    df8d3de View commit details
    Browse the repository at this point in the history

  3. added option to remove var completely from MuData

    @demian1
    demian1 committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    e2515fb View commit details
    Browse the repository at this point in the history

  4. order names according to orderby

    dbdimitrov committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    694ef8e View commit details
    Browse the repository at this point in the history

  5. fixed wrong quotes around variable

    @demian1
    demian1 committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    003006d View commit details
    Browse the repository at this point in the history

  6. check if order is kept

    dbdimitrov committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    fdbd487 View commit details
    Browse the repository at this point in the history

Commits on Sep 7, 2023

  1. add

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    9856897 View commit details
    Browse the repository at this point in the history

  2. Merge commit 'refs/pull/42/head' of github.com:saezlab/liana-py into dev

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    eba79a8 View commit details
    Browse the repository at this point in the history

  3. add keep_stats to adata_to_views

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    32146d7 View commit details
    Browse the repository at this point in the history

  4. standardise verbosity

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    9399fd0 View commit details
    Browse the repository at this point in the history

  5. resolve check if package redundancies

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    283cccc View commit details
    Browse the repository at this point in the history

  6. resolve verbosity #43

    dbdimitrov committed Sep 7, 2023
    Configuration menu
    Copy the full SHA
    1d120b7 View commit details
    Browse the repository at this point in the history

Commits on Sep 8, 2023

  1. set neg rsq to 0, lm for <= 2 views, reformat coeff calc

    dbdimitrov committed Sep 8, 2023
    Configuration menu
    Copy the full SHA
    59f2f9b View commit details
    Browse the repository at this point in the history

  2. enable a mask to be passed (stoopid Pau)

    dbdimitrov committed Sep 8, 2023
    Configuration menu
    Copy the full SHA
    e014866 View commit details
    Browse the repository at this point in the history

Commits on Sep 10, 2023

  1. test misty mask

    dbdimitrov committed Sep 10, 2023
    Configuration menu
    Copy the full SHA
    179e879 View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2023

  1. reformat misty pipe, change label to @Label

    dbdimitrov committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    6f881ad View commit details
    Browse the repository at this point in the history

  2. re-run tutorials

    dbdimitrov committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    e2dd4d2 View commit details
    Browse the repository at this point in the history

  3. reduce sensitivity for sklearn tests on mac

    dbdimitrov committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    6ce15b3 View commit details
    Browse the repository at this point in the history

  4. lower importance decimal

    dbdimitrov committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    a9115ab View commit details
    Browse the repository at this point in the history

  5. update release notes

    dbdimitrov committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    c32f352 View commit details
    Browse the repository at this point in the history