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[WIP] Domain adaptation#108

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HendrikSchmidt wants to merge 170 commits intodevelopmentrvandewater/YAIB:developmentfrom domain-adaptationrvandewater/YAIB:domain-adaptationCopy head branch name to clipboard

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Commits

Commits on Jan 6, 2023

• Update .gitignore

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• Merge branch 'development' into domain-adaptation

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• introduce target split

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• Merge branch 'hotfix-train-val' into domain-adaptation

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Commits on Jan 7, 2023

• refactor fold size

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• Update train.py

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• make cpu and gin flag general, rename gin flag

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• Update preprocess.py

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• add basis for domain adaptation

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• Merge branch 'hotfix-train-val' into domain-adaptation

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• refactor folds for targets

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Commits on Jan 11, 2023

• Merge branch 'development' into domain-adaptation

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• Merge branch 'development' into domain-adaptation

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• add evaluation function to test whole dataset

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• update predict function for booster

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• update domain adaptation script

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• remove weight tuning, adapt for LR

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• iterate over target sizes

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• aggregate and average DA metrics

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• Update domain_adaptation.py

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• use data_dir for da

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Commits on Jan 12, 2023

• disable confusion matrix

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• Update Transformer.gin

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• rename encoder to model in wrapper

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• fix model path

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• Update Transformer.gin

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• load correct wrapper

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• initialize wrapper without model

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• instantiate encoder in wrapper

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• revert instantiation

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• load model configs

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• update lgbm config

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• Update domain_adaptation.py

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• Update domain_adaptation.py

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• include model in log_dir

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• reduce hyperparameter training for shallow models

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• reset gin config for repeated HP tuning

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• remove duplicate output transform

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• Update domain_adaptation.py

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• Update domain_adaptation.py

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• move metrics calculation to wrapper

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• fix function call

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• increase batch_size for test

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• Update wrappers.py

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• Update Transformer.gin

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• Update wrappers.py

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• Update wrappers.py

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• Update domain_adaptation.py

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• Update wrappers.py

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• Update wrappers.py

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• Update wrappers.py

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• change metric calculation

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• Update Transformer.gin

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• Update domain_adaptation.py

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• Update wrappers.py

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• add dg baseline

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• Merge branch 'development' into domain-adaptation

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• fix json encoder

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• Update Transformer.gin

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• only execute da for one dataset at a time

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• remove run dir

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Commits on Jan 13, 2023

• Create da_to_csv.py

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Commits on Jan 14, 2023

• remove evaluate and test_all

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• Update LogisticRegression.gin

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• Update preprocess.py

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• Update preprocess.py

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• Update da_to_csv.py

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• fix comments

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• test different weights

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• only plot avg

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• test other weights

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• Update domain_adaptation.py

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• Update da_to_csv.py

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• Update da_to_csv.py

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• auc and loss based weigth functions

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Commits on Jan 15, 2023

• cache predictions

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• test target with predictions

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• test cc with preds

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Commits on Jan 16, 2023

• boil down to relevant appraoches

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• format

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• Update da_to_csv.py

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• Update domain_adaptation.py

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• fix da for miiv

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Commits on Jan 17, 2023

• Update domain_adaptation.py

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• fix weight for combined

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• include max prediction

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• Update domain_adaptation.py

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Commits on Jan 18, 2023

• format

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• Update domain_adaptation.py

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• changes for sepsis

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Commits on Jan 19, 2023

• correct logging for loss weighted

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• only use source weights

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• use debug to set source datasets

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• Update run.py

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• fix loss_weighted

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Commits on Jan 20, 2023

• Update domain_adaptation.py

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Commits on Jan 21, 2023

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Commits on Jan 22, 2023

• Update da_to_csv.py

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Commits on Jan 23, 2023

• rename script

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• Create sepsis_to_csv.py

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• Update sepsis_to_csv.py

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Commits on Jan 25, 2023

• tables to latex

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Commits on Aug 8, 2023

• Merge branch 'development' into domain-adaptation

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• import domain adaptation

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• make train run

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