add dispatcher for sqrtm #12
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| # The name is short because we mostly care how it appears in the pull request | |
| # "checks" dialogue box - it looks like | |
| # Tests / ubuntu-latest, python-3.9, defaults | |
| # or similar. | |
| name: Tests | |
| on: | |
| [push, pull_request] | |
| defaults: | |
| run: | |
| # The slightly odd shell call is to force bash to read .bashrc, which is | |
| # necessary for having conda behave sensibly. We use bash as the shell even | |
| # on Windows, since we don't run anything much complicated, and it makes | |
| # things much simpler. | |
| shell: bash -l -e {0} | |
| jobs: | |
| cases: | |
| name: ${{ matrix.os }}, python${{ matrix.python-version }}, ${{ matrix.case-name }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| MPLBACKEND: Agg # Explicitly define matplotlib backend for Windows tests | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| # Test other versions of Python in special cases to avoid exploding the | |
| # matrix size; make sure to test all supported versions in some form. | |
| python-version: ["3.11"] | |
| case-name: [defaults] | |
| numpy-requirement: [">=1.22"] | |
| scipy-requirement: [">=1.8"] | |
| coverage-requirement: ["==6.5"] | |
| # Extra special cases. In these, the new variable defined should always | |
| # be a truth-y value (hence 'nomkl: 1' rather than 'mkl: 0'), because | |
| # the lack of a variable is _always_ false-y, and the defaults lack all | |
| # the special cases. | |
| include: | |
| # Test with the version 2 of numpy comming soon. | |
| - case-name: numpy2 | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| scipy-requirement: "" | |
| numpy-requirement: "==2.0.0rc2" | |
| pypi: 1 | |
| # Binaries compiled with numpy 2 should be compatible when using | |
| # numpy 1.X at runtime. | |
| - case-name: numpy2_to_1 | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| scipy-requirement: "" | |
| numpy-requirement: "==2.0.0rc2" | |
| roll_back_numpy: 1 | |
| pypi: 1 # numpy 2 not yet available on conda | |
| # Python 3.10, no mkl, scipy 1.9, numpy 1.23 | |
| # Scipy 1.9 did not support cython 3.0 yet. | |
| # cython#17234 | |
| - case-name: no mkl | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| scipy-requirement: ">=1.9,<1.10" | |
| numpy-requirement: ">=1.23,<1.24" | |
| condaforge: 1 | |
| oldcython: 1 | |
| nomkl: 1 | |
| pytest-extra-options: "-W ignore:dep_util:DeprecationWarning" | |
| # Python 3.10, no cython, scipy 1.10, numpy 1.24 | |
| - case-name: no cython | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| scipy-requirement: ">=1.10,<1.11" | |
| numpy-requirement: ">=1.24,<1.25" | |
| oldcython: 1 | |
| nocython: 1 | |
| # Python 3.11 and recent numpy | |
| # Use conda-forge to provide Python 3.11 and latest numpy | |
| # Ignore deprecation of the cgi module in Python 3.11 that is | |
| # still imported by Cython.Tempita. This was addressed in | |
| # https://github.com/cython/cython/pull/5128 but not backported | |
| # to any currently released version. | |
| - case-name: Python 3.11 | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| condaforge: 1 | |
| scipy-requirement: ">=1.11,<1.12" | |
| numpy-requirement: ">=1.25,<1.26" | |
| conda-extra-pkgs: "suitesparse" # for compiling cvxopt | |
| # Python 3.12 and latest numpy | |
| # Use conda-forge to provide Python 3.11 and latest numpy | |
| - case-name: Python 3.12 | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| scipy-requirement: ">=1.12,<1.13" | |
| numpy-requirement: ">=1.26,<1.27" | |
| condaforge: 1 | |
| pytest-extra-options: "-W ignore:datetime:DeprecationWarning" | |
| # Install mpi4py to test mpi_pmap | |
| # Should be enough to include this in one of the runs | |
| includempi: 1 | |
| # Mac | |
| # Mac has issues with MKL since september 2022. | |
| - case-name: macos | |
| # setup-miniconda not compatible with macos-latest presently. | |
| # https://github.com/conda-incubator/setup-miniconda/issues/344 | |
| os: macos-12 | |
| python-version: "3.11" | |
| condaforge: 1 | |
| nomkl: 1 | |
| # Windows. Once all tests pass without special options needed, this | |
| # can be moved to the main os list in the test matrix. All the tests | |
| # that fail currently seem to do so because mcsolve uses | |
| # multiprocessing under the hood. Windows does not support fork() | |
| # well, which makes transfering objects to the child processes | |
| # error prone. See, e.g., https://github.com/qutip/qutip/issues/1202 | |
| - case-name: Windows | |
| os: windows-latest | |
| python-version: "3.11" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: ${{ matrix.condaforge == 1 && 'conda-forge' || 'defaults' }} | |
| - name: Install QuTiP and dependencies | |
| # In the run, first we handle any special cases. We do this in bash | |
| # rather than in the GitHub Actions file directly, because bash gives us | |
| # a proper programming language to use. | |
| # We install without build isolation so qutip is compiled with the | |
| # version of cython, scipy, numpy in the test matrix, not a temporary | |
| # version use in the installation virtual environment. | |
| run: | | |
| # Install the extra requirement | |
| python -m pip install pytest>=5.2 pytest-rerunfailures # tests | |
| python -m pip install matplotlib>=1.2.1 # graphics | |
| python -m pip install cvxpy>=1.0 cvxopt # semidefinite | |
| python -m pip install ipython # ipython | |
| python -m pip install loky tqdm # extras | |
| python -m pip install "coverage${{ matrix.coverage-requirement }}" chardet | |
| python -m pip install pytest-cov coveralls pytest-fail-slow | |
| if [[ "${{ matrix.pypi }}" ]]; then | |
| pip install "numpy${{ matrix.numpy-requirement }}" "scipy${{ matrix.scipy-requirement }}" | |
| elif [[ -z "${{ matrix.nomkl }}" ]]; then | |
| conda install blas=*=mkl "numpy${{ matrix.numpy-requirement }}" "scipy${{ matrix.scipy-requirement }}" | |
| elif [[ "${{ matrix.os }}" =~ ^windows.*$ ]]; then | |
| # Conda doesn't supply forced nomkl builds on Windows, so we rely on | |
| # pip not automatically linking to MKL. | |
| pip install "numpy${{ matrix.numpy-requirement }}" "scipy${{ matrix.scipy-requirement }}" | |
| else | |
| conda install nomkl "numpy${{ matrix.numpy-requirement }}" "scipy${{ matrix.scipy-requirement }}" | |
| fi | |
| if [[ -n "${{ matrix.conda-extra-pkgs }}" ]]; then | |
| conda install "${{ matrix.conda-extra-pkgs }}" | |
| fi | |
| if [[ "${{ matrix.includempi }}" ]]; then | |
| # Use openmpi because mpich causes problems. Note, environment variable names change in v5 | |
| conda install "openmpi<5" mpi4py | |
| fi | |
| if [[ "${{ matrix.oldcython }}" ]]; then | |
| python -m pip install cython==0.29.36 filelock | |
| else | |
| python -m pip install cython filelock | |
| fi | |
| python -m pip install -e . -v --no-build-isolation | |
| if [[ "${{ matrix.nocython }}" ]]; then | |
| python -m pip uninstall cython -y | |
| fi | |
| if [[ "${{ matrix.roll_back_numpy }}" ]]; then | |
| # Binary compiled with numpy 2.X should be compatible with numpy 1.X | |
| python -m pip install "numpy<1.24" | |
| fi | |
| - name: Package information | |
| run: | | |
| conda list | |
| python -c "import qutip; qutip.about()" | |
| python -c "import qutip; print(qutip.settings)" | |
| - name: Environment information | |
| run: | | |
| uname -a | |
| if [[ "ubuntu-latest" == "${{ matrix.os }}" ]]; then | |
| hostnamectl | |
| lscpu | |
| free -h | |
| fi | |
| - name: Run tests | |
| # If our tests are running for longer than an hour, _something_ is wrong | |
| # somewhere. The GitHub default is 6 hours, which is a bit long to wait | |
| # to see if something hung. | |
| timeout-minutes: 60 | |
| run: | | |
| if [[ -n "${{ matrix.openmp }}" ]]; then | |
| # Force OpenMP runs to use more threads, even if there aren't | |
| # actually that many CPUs. We have to check any dispatch code is | |
| # truly being executed. | |
| export QUTIP_NUM_PROCESSES=2 | |
| fi | |
| if [[ "${{ matrix.includempi }}" ]]; then | |
| # By default, the max. number of allowed worker processes in openmpi is | |
| # (number of physical cpu cores) - 1. | |
| # We only have 2 physical cores, but we want to test mpi_pmap with 2 workers. | |
| export OMPI_MCA_rmaps_base_oversubscribe=true | |
| fi | |
| pytest -Werror --strict-config --strict-markers --fail-slow=300 --durations=0 --durations-min=1.0 --verbosity=1 --cov=qutip --cov-report= --color=yes ${{ matrix.pytest-extra-options }} qutip/tests | |
| # Above flags are: | |
| # -Werror | |
| # treat warnings as errors | |
| # --strict-config | |
| # error out if the configuration file is not parseable | |
| # --strict-markers | |
| # error out if a marker is used but not defined in the | |
| # configuration file | |
| # --timeout=300 | |
| # error any individual test that goes longer than the given time | |
| # --durations=0 --durations-min=1.0 | |
| # at the end, show a list of all the tests that took longer than a | |
| # second to run | |
| # --verbosity=1 | |
| # turn the verbosity up so pytest prints the names of the tests | |
| # it's currently working on | |
| # --cov=qutip | |
| # limit coverage reporting to code that's within the qutip package | |
| # --cov-report= | |
| # don't print the coverage report to the terminal---it just adds | |
| # cruft, and we're going to upload the .coverage file to Coveralls | |
| # --color=yes | |
| # force coloured output in the terminal | |
| - name: Upload to Coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.github_token }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.case-name }} | |
| COVERALLS_PARALLEL: true | |
| run: coveralls --service=github | |
| towncrier-check: | |
| name: Verify Towncrier entry added | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Towncrier | |
| run: | | |
| python -m pip install towncrier | |
| - name: Verify Towncrier entry added | |
| if: github.event_name == 'pull_request' | |
| env: | |
| BASE_BRANCH: ${{ github.base_ref }} | |
| run: | | |
| # Fetch the pull request' base branch so towncrier will be able to | |
| # compare the current branch with the base branch. | |
| # Source: https://github.com/actions/checkout/#fetch-all-branches. | |
| git fetch --no-tags origin +refs/heads/${BASE_BRANCH}:refs/remotes/origin/${BASE_BRANCH} | |
| towncrier check --compare-with origin/${BASE_BRANCH} | |
| towncrier build --version "$(cat VERSION)" --draft | |
| finalise: | |
| name: Finalise coverage reporting | |
| needs: cases | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finalise coverage reporting | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.github_token }} | |
| run: | | |
| python -m pip install coveralls | |
| coveralls --service=github --finish |