CRAN Version 1.2.0

rxtracto() now works with projected data
utility to convert rxtracto_3D() output to long form

DESCRIPTION

@@ -1,12 +1,13 @@
 Package: rerddapXtracto
 Type: Package
 Title: Extracts Environmental Data from 'ERDDAP' Web Services
-Version: 1.1.7
-Date: 2023-10-18
+Version: 1.2.0
+Date: 2024-1-12
 Authors@R: c(
      person("Roy", "Mendelssohn", email = "[email protected]", role = c("aut","cre")),
-    person("Marie", "Auger-Methe", role = "ctb")
-    )
+     person("Marie", "Auger-Methe", role = "ctb"),
+     person("Sunny", "Bak-Hospital", role = "ctb")
+     )
 Description: Contains three functions that access
     environmental data from any 'ERDDAP' data web service. The rxtracto() function extracts
     data along a trajectory for a given "radius" around the point. The
@@ -40,6 +41,7 @@ Suggests:
     cmocean,
     gganimate,
     knitr,
+    lubridate,
     mapdata,
     rmarkdown
 RoxygenNote: 7.2.3

NEWS.md

@@ -1,3 +1,7 @@
+# rerddapXtracto 1.2.0
+
+'rxtracto()' now works in coordinate space for projected data
+
 # rerddapXtracto 1.1.7
 
 removed archived packages maptools and rgdal from Suggests

R/PB_Argos.R

@@ -0,0 +1,18 @@
+#'  Polar Bear Track Data
+#'
+#' Telemetry data of a tagged polar bear
+#'
+#'@format A data frame with 1919 obs. of 4 variables:
+#' \describe{
+#'   \item{DateTime}{time of observation}
+#'   \item{QualClass}{Quality Flag}
+#'   \item{Lat}{latitude of observation}
+#'   \item{Lon}{longitude of observation}
+#'   }
+#' @source
+#' \describe{
+#'   \item{dryad dataset}{https://datadryad.org/stash/dataset/doi:10.5061/dryad.4qrfj6q96}
+#'   \item{Citation}{Auger-Méthé, Marie; Derocher, Andrew E. (2021). Argos and GPS data for a polar bear track [Dataset]. Dryad. https://doi.org/10.5061/dryad.4qrfj6q96}
+#'   \item{Associated Paper}{Auger-Méthé, M.,  Newman, K.,  Cole, D.,  Empacher, F.,  Gryba, R.,  King, A. A.,  Leos-Barajas, V.,  Mills Flemming, J., Nielsen, A.,  Petris, G., and  Thomas, L..  2021.  A guide to state–space modeling of ecological time series. Ecological Monographs  91(4):e01470. 10.1002/ecm.1470}
+#' }
+"PB_Argos"

R/cmocean.R

@@ -0,0 +1,28 @@
+#' cmocean colors
+#' The cmocean color palette by Kristen Thyng
+#'
+#' str(cmocean)
+#' List of 22
+#' $ algae
+#' $ amp
+#' $ balance
+#' $ curl
+#' $ deep
+#' $ delta
+#' $ dense
+#' $ diff
+#' $ gray
+#' $ haline
+#' $ ice
+#' $ matter
+#' $ oxy
+#' $ phase
+#' $ rain
+#' $ solar
+#' $ speed
+#' $ tarn
+#' $ tempo
+#' $ topo
+#' $ thermal
+#' $ turbid
+"cmocean"

R/colors.R

@@ -0,0 +1,19 @@
+#' cmocean colors
+#' The cmocean color palette by Kristen Thyng as implemented in the R package "oce"
+#'
+#' str(colors)
+#' List of 13
+#'  $ viridis
+#'  $ cdom
+#'  $ chlorophyll
+#'  $ density
+#'  $ freesurface
+#'  $ oxygen
+#'  $ par
+#'  $ phase
+#'  $ salinity
+#'  $ temperature
+#'  $ turbidity
+#'  $ velocity
+#'  $ vorticity
+"colors"

R/rxtracto.R

@@ -465,7 +465,12 @@ rxtracto <- function(dataInfo, parameter = NULL, xcoord=NULL, ycoord = NULL,
 
 
   }
-  out_dataframe <- structure(out_dataframe, class = c('list', 'rxtractoTrack'))
+  out_dataframe <- structure(out_dataframe,
+                             class = c('list', 'rxtractoTrack'),
+                             base_url = urlbase,
+                             datasetid = attributes(dataInfo)$datasetid
+
+                             )
   if (progress_bar) {
     close(pb)
   }

R/rxtracto_3D.R

@@ -196,7 +196,11 @@ if (!is.list(extract)) {
   return("URL call error")
 }
 
-extract <- structure(extract, class = c('list', 'rxtracto3D'))
+extract <- structure(extract,
+                     class = c('list', 'rxtracto3D'),
+                     base_url = urlbase,
+                     datasetid = attributes(dataInfo)$datasetid
+                     )
 
 }
 

README.md

@@ -1,6 +1,11 @@
-# rerddapXtracto (Version 1.1.6)
+# rerddapXtracto (Version 1.2.0)
 rerddapXtracto - R package for accessing environmental data using 'rerddap' 
 
+******
+`rxtracto()`now works in coordinate space for projected data
+******
+
+
 ******
 `tidy_grid()`function to convert result of 'rxtracto_3D()' or 'rxtractogon()' to "tidy"" long-format
 ******

cran-comments.md

@@ -1,9 +1,10 @@
-##  Version 1.1.7
+##  Version 1.2.7
+
+'rxtracto()' now works in coordinate space for projected data
 
-removed maptools and rgdal from Suggests
 
 ## Test environments
-* local OS X install, R 4.3.1
+* local OS X install, R 4.3.2
 * rhub 
 * win-buider
 * mac-builder