The goal is to make a shiny app which contains my workflow for lipidomics profiling. The app can read exported results from MS-DIAL v4.60 and higher. It should contain having a look at the QC and an easier way to check the identification of the lipids. I also hope to add some simple analysis.
In the end it should be possible do download a report and lipid list (e.g. as Excel file).
This is still a lot of work in progress!!
This shiny app is build inside an R package and can be installed with devtools::install_github("ricoderks/lipidomics").
You can use it locally from RStudio by:
library(lipidomics)
launchApp()
To run it from a shiny server you have to make sure the package is installed and then
you only have to create a file called app.R in the folder where you want to run it from.
The file app.R should only contain:
lipidomics::launchApp()
I added 2 files (positive and negative mode) as example data. After installing the package
you can find them in the folder extdata. In the repository you can find them in inst/extdata.