version 0.2

Numerous code updates.

• Refactored code so that transforms are passed around, not separate translation/rotations
• TransformLibrary can handle all sorts of different transforms
• Explore use of code to sample ribose conformations
• Explore use of code to understand if inline attack conformation are associated with circularization.

version 0.1

Initial release.
Computatation of RNA circularization parameters: Effective concentrations, trajectories.
Needs to be refactored a bit to allow generalization to, e.g., base pair steps, or junctions; or ribose puckers.