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@marekkokot great, thanks. can you tag a new release with these bugfixes, so that I can update the bioconda recipe to install the fixed version? if not ready for a full numbered release it can be a pre-release e.g. 3.1.0-rc.1 ; just needs a tagged name.
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It's done. BTW we will upgrade to GPL 3, but again I don't know when :( It should resolve some licensing issues.