Fix skelet

core/opl/StatusData.py

@@ -0,0 +1,267 @@
+import copy
+import datetime
+import json
+import logging
+import os
+import os.path
+import tempfile
+import requests
+import yaml
+from . import date
+
+
+class StatusData:
+    def __init__(self, filename, data=None):
+        self.filename = filename
+        if filename.startswith("http://") or filename.startswith("https://"):
+            tmp = tempfile.mktemp()
+            logging.info(
+                f"Downloading {filename} to {tmp} and will work with that file from now on"
+            )
+            r = requests.get(filename, verify=False)
+            with open(tmp, "wb") as fp:
+                fp.write(r.content)
+            filename = tmp
+
+        self._filename = filename
+        self._filename_mtime = None
+        if data is None:
+            self.load()
+        else:
+            self._data = data
+            assert "name" in data
+            assert "started" in data
+            assert "ended" in data
+            assert "result" in data
+
+    def load(self):
+        try:
+            self._filename_mtime = os.path.getmtime(self._filename)
+            with open(self._filename, "r") as fp:
+                self._data = json.load(fp)
+            logging.debug(f"Loaded status data from {self._filename}")
+        except FileNotFoundError:
+            self.clear()
+            logging.info(f"Opening empty status data file {self._filename}")
+
+    def __getitem__(self, key):
+        logging.debug(f"Getting item {key} from {self._filename}")
+        return self._data.get(key, None)
+
+    def __setitem__(self, key, value):
+        logging.debug(f"Setting item {key} from {self._filename}")
+        self._data[key] = value
+
+    def __repr__(self):
+        return f"<StatusData instance version={self.get('version')} id={self.get('id')} started={self.get_date('started')}>"
+
+    def __eq__(self, other):
+        return self._data == other._data
+
+    def __gt__(self, other):
+        logging.info(f"Comparing {self} to {other}")
+        return self.get_date("started") > other.get_date("started")
+
+    def _split_mutlikey(self, multikey):
+        """
+        Dots delimits path in the nested dict.
+        """
+        if multikey == "":
+            return []
+        else:
+            return multikey.split(".")
+
+    def _get(self, data, split_key):
+        if split_key == []:
+            return data
+
+        if not isinstance(data, dict):
+            logging.warning(
+                "Attempted to dive into non-dict. Falling back to return None"
+            )
+            return None
+
+        try:
+            new_data = data[split_key[0]]
+        except KeyError:
+            return None
+
+        if len(split_key) == 1:
+            return new_data
+        else:
+            return self._get(new_data, split_key[1:])
+
+    def get(self, multikey):
+        """
+        Recursively go through status_data data structure according to
+        multikey and return its value, or None. For example:
+
+        For example:
+
+            get(('a', 'b', 'c'))
+
+        returns:
+
+            self._data['a']['b']['c']
+
+        and if say `data['a']['b']` does not exist (or any other key along
+        the way), return None.
+        """
+        split_key = self._split_mutlikey(multikey)
+        logging.debug(f"Getting {split_key} from {self._filename}")
+        return self._get(self._data, split_key)
+
+    def get_date(self, multikey):
+        i = self.get(multikey)
+        if i is None:
+            logging.warning(f"Field {multikey} is None, so can not convert to datetime")
+            return None
+        return date.my_fromisoformat(i)
+
+    def _set(self, data, split_key, value):
+        try:
+            new_data = data[split_key[0]]
+        except KeyError:
+            if len(split_key) == 1:
+                data[split_key[0]] = value
+                return
+            else:
+                data[split_key[0]] = {}
+                new_data = data[split_key[0]]
+
+        if len(split_key) == 1:
+            data[split_key[0]] = value
+            return
+        else:
+            return self._set(new_data, split_key[1:], value)
+
+    def set(self, multikey, value):
+        """
+        Recursively go through status_data data structure and set value for
+        multikey. For example:
+
+            set('a.b.c', 123)
+
+        set:
+
+            self._data['a']['b']['c'] = 123
+
+        even if `self._data['a']['b']` do not exists - then it is created as
+        empty dict.
+        """
+        split_key = self._split_mutlikey(multikey)
+        logging.debug(f"Setting {'.'.join(split_key)} in {self._filename} to {value}")
+        if isinstance(value, datetime.datetime):
+            value = value.isoformat()  # make it a string with propper format
+        self._set(self._data, split_key, copy.deepcopy(value))
+
+    def set_now(self, multikey):
+        """
+        Set given multikey to current datetime
+        """
+        now = datetime.datetime.utcnow().replace(tzinfo=datetime.timezone.utc)
+        return self.set(multikey, now.isoformat())
+
+    def set_subtree_json(self, multikey, file_path):
+        """
+        Set given multikey to contents of JSON formated file provided by its path
+        """
+        with open(file_path, "r") as fp:
+            if file_path.endswith(".json"):
+                data = json.load(fp)
+            elif file_path.endswith(".yaml"):
+                data = yaml.load(fp, Loader=yaml.SafeLoader)
+            else:
+                raise Exception(
+                    f"Unrecognized extension of file to import: {file_path}"
+                )
+        return self.set(multikey, data)
+
+    def _remove(self, data, split_key):
+        try:
+            new_data = data[split_key[0]]
+        except KeyError:
+            return
+
+        if len(split_key) == 1:
+            del data[split_key[0]]
+            return
+        else:
+            return self._remove(new_data, split_key[1:])
+
+    def remove(self, multikey):
+        """
+        Remove given multikey (and it's content) from status data file
+        """
+        split_key = self._split_mutlikey(multikey)
+        logging.debug(f"Removing {split_key} from {self._filename}")
+        self._remove(self._data, split_key)
+
+    def list(self, multikey):
+        """
+        For given path, return list of all existing paths below this one
+        """
+        out = []
+        split_key = self._split_mutlikey(multikey)
+        logging.debug(f"Listing {split_key}")
+        for k, v in self._get(self._data, split_key).items():
+            key = ".".join(list(split_key) + [k])
+            if isinstance(v, dict):
+                out += self.list(key)
+            else:
+                out.append(key)
+        return out
+
+    def clear(self):
+        """
+        Default structure
+        """
+        self._data = {
+            "name": None,
+            "started": date.get_now_str(),
+            "ended": None,
+            "owner": None,
+            "result": None,
+            "results": {},
+            "parameters": {},
+            "measurements": {},
+        }
+
+    def info(self):
+        out = ""
+        out += f"Filename: {self._filename}\n"
+        for k, v in self._data.items():
+            if not isinstance(v, dict):
+                out += f"{k}: {v}\n"
+        return out
+
+    def dump(self):
+        return self._data
+
+    def save(self, filename=None):
+        """Save this status data document.
+
+        It makes sure that on disk file was not modified since we loaded it,
+        but if you provide a filename, this check is skipped.
+        """
+        if filename is None:
+            if self._filename_mtime is not None:
+                current_mtime = os.path.getmtime(self._filename)
+                if self._filename_mtime != current_mtime:
+                    tmp = tempfile.mktemp()
+                    self._save(tmp)
+                    raise Exception(
+                        f"Status data file {self._filename} was modified since we loaded it so I do not want to overwrite it. Instead, saved to {tmp}"
+                    )
+        else:
+            self._filename = filename
+
+        self._save(self._filename)
+
+    def _save(self, filename):
+        """Just save status data document to JSON file on disk"""
+        with open(filename, "w+") as fp:
+            json.dump(self.dump(), fp, sort_keys=True, indent=4)
+        if filename == self._filename:
+            self._filename_mtime = os.path.getmtime(filename)
+        logging.debug(f"Saved status data to {filename}")

core/opl/cluster_read.py

@@ -16,7 +16,7 @@
 from . import data
 from . import date
 from . import status_data
-from . import skelet
+from . import retry
 
 
 def execute(command):
@@ -181,7 +181,7 @@ def _sanitize_target(self, target):
         target = target.replace("$Cloud", self.args.grafana_prefix)
         return target
 
-    @skelet.retry_on_traceback(max_attempts=10, wait_seconds=1)
+    @retry.retry_on_traceback(max_attempts=10, wait_seconds=1)
     def measure(self, ri, name, grafana_target):
         assert (
             ri.start is not None and ri.end is not None
@@ -456,7 +456,9 @@ def get_source(self, environment, path):
 
 
 class RequestedInfo:
-    def __init__(self, config, start=None, end=None, args=argparse.Namespace(), sd=None):
+    def __init__(
+        self, config, start=None, end=None, args=argparse.Namespace(), sd=None
+    ):
         """
         "config" is input for config_stuff function
         "start" and "end" are datetimes needed if config file contains some

core/opl/data.py

@@ -217,13 +217,13 @@ def data_stats(data):
             "max": max(data),
             "sum": sum(data),
             "mean": statistics.mean(data),
-            "non_zero_mean": statistics.mean(non_zero_data)
-            if len(non_zero_data) > 0
-            else 0.0,
+            "non_zero_mean": (
+                statistics.mean(non_zero_data) if len(non_zero_data) > 0 else 0.0
+            ),
             "median": statistics.median(data),
-            "non_zero_median": statistics.median(non_zero_data)
-            if len(non_zero_data) > 0
-            else 0.0,
+            "non_zero_median": (
+                statistics.median(non_zero_data) if len(non_zero_data) > 0 else 0.0
+            ),
             "stdev": statistics.stdev(data) if len(data) > 1 else 0.0,
             "range": max(data) - min(data),
             "percentile25": q25,

core/opl/date.py

@@ -30,3 +30,9 @@ def my_fromisoformat(string):
         out = datetime.datetime.strptime(string, "%Y-%m-%dT%H:%M:%S")
     out = out.replace(tzinfo=string_tz)
     return out
+
+
+def get_now_str():
+    now = datetime.datetime.utcnow()
+    now = now.replace(tzinfo=datetime.timezone.utc)
+    return now.isoformat()

core/opl/retry.py

@@ -0,0 +1,43 @@
+import time
+import logging
+from functools import wraps
+
+
+def retry_on_traceback(max_attempts=10, wait_seconds=1):
+    """
+    Retries a function until it succeeds or the maximum number of attempts
+    or wait time is reached.
+
+    This is to mimic `@retry` decorator from Tenacity so we do not depend
+    on it.
+
+    Args:
+        max_attempts: The maximum number of attempts to retry the function.
+        wait_seconds: The number of seconds to wait between retries.
+
+    Returns:
+        A decorator that retries the wrapped function.
+    """
+    assert max_attempts >= 0, "It does not make sense to have less than 0 retries"
+    assert wait_seconds >= 0, "It does not make sense to wait les than 0 seconds"
+
+    def decorator(func):
+        @wraps(func)
+        def wrapper(*args, **kwargs):
+            attempt = 0
+            while True:
+                try:
+                    return func(*args, **kwargs)
+                except Exception as e:
+                    if attempt >= max_attempts:
+                        raise  # Reraise the exception after all retries are exhausted
+
+                    attempt += 1
+                    logging.debug(
+                        f"Retrying in {wait_seconds} seconds. Attempt {attempt}/{max_attempts} failed with: {e}"
+                    )
+                    time.sleep(wait_seconds)
+
+        return wrapper
+
+    return decorator