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ci.yml
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name: reactome_chatbot CI
on:
workflow_dispatch:
pull_request:
types:
- opened
- synchronize
push:
branches:
- main
permissions:
id-token: write
contents: read
jobs:
lint:
if: ${{ github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python and Poetry
uses: ./.github/actions/install_python_poetry
- name: Run linters
run: |
poetry run ruff check .
poetry run mypy .
poetry run isort --check .
poetry-check:
if: ${{ github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-13]
steps:
- uses: actions/checkout@v4
- name: Check poetry.lock for changes
id: check-poetry-lock
uses: tj-actions/changed-files@v45
with:
files: poetry.lock
- name: Set up Python and Poetry
if: steps.check-poetry-lock.outputs.any_changed == 'true'
uses: ./.github/actions/install_python_poetry
- name: Verify Python imports
if: steps.check-poetry-lock.outputs.any_changed == 'true'
env:
PYTHONPATH: ./bin:./src
run: |
poetry check
poetry run python ./.github/actions/verify_imports.py
docker-build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Build and push Docker image
uses: docker/build-push-action@v5
with:
context: .
file: ./Dockerfile
tags: reactome-chatbot:${{ github.sha }}
outputs: type=docker,dest=/tmp/image.tar
- uses: actions/upload-artifact@v4
with:
name: image-artifact
path: /tmp/image.tar
docker-push:
if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
needs: docker-build
runs-on: ubuntu-latest
steps:
- uses: actions/download-artifact@v4
with:
name: image-artifact
path: /tmp
- id: get-hash
run: |
FULL_SHA=${{ github.sha }}
echo "SHORT_SHA=${FULL_SHA:0:7}" >> $GITHUB_OUTPUT
- env:
AWS_REGION: us-east-1
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: ${{ vars.AWS_ROLE }}
aws-region: ${{ env.AWS_REGION }}
- id: login-ecr
uses: aws-actions/amazon-ecr-login@v2
with:
registry-type: public
- env:
AWS_REGISTRY: ${{ steps.login-ecr.outputs.registry }}
AWS_REGISTRY_ALIAS: reactome
AWS_REPO: reactome-chatbot
IMG_TAG: ${{ steps.get-hash.outputs.SHORT_SHA }}
run: |
docker load --input /tmp/image.tar
docker image tag reactome-chatbot:${{ github.sha }} $AWS_REGISTRY/$AWS_REGISTRY_ALIAS/$AWS_REPO:$IMG_TAG
docker image tag reactome-chatbot:${{ github.sha }} $AWS_REGISTRY/$AWS_REGISTRY_ALIAS/$AWS_REPO:latest
docker push $AWS_REGISTRY/$AWS_REGISTRY_ALIAS/$AWS_REPO:$IMG_TAG
docker push $AWS_REGISTRY/$AWS_REGISTRY_ALIAS/$AWS_REPO:latest