Merge pull request #329 from r-spatialecology/main

Resubmission v2.1.3
r-spatialecology · Jun 26, 2024 · a77e718 · a77e718
2 parents d006596 + 5b3cee2
commit a77e718
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diff --git a/R/lsm_c_area_mn.R b/R/lsm_c_area_mn.R
@@ -25,7 +25,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_area}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_area_cv}},
 #' \code{\link{lsm_c_area_sd}}, \cr
 #' \code{\link{lsm_l_area_mn}},

diff --git a/R/lsm_c_area_sd.R b/R/lsm_c_area_sd.R
@@ -25,7 +25,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_area}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_area_mn}},
 #' \code{\link{lsm_c_area_cv}}, \cr
 #' \code{\link{lsm_l_area_mn}},

diff --git a/R/lsm_c_cai_mn.R b/R/lsm_c_cai_mn.R
@@ -30,7 +30,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_cai}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_cai_sd}},
 #' \code{\link{lsm_c_cai_cv}}, \cr
 #' \code{\link{lsm_l_cai_mn}},

diff --git a/R/lsm_c_cai_sd.R b/R/lsm_c_cai_sd.R
@@ -32,7 +32,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_cai}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_cai_mn}},
 #' \code{\link{lsm_c_cai_cv}}, \cr
 #' \code{\link{lsm_l_cai_mn}},

diff --git a/R/lsm_c_circle_cv.R b/R/lsm_c_circle_cv.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_mn}},
 #' \code{\link{lsm_c_circle_sd}}, \cr
 #' \code{\link{lsm_l_circle_mn}},

diff --git a/R/lsm_c_circle_mn.R b/R/lsm_c_circle_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_sd}},
 #' \code{\link{lsm_c_circle_cv}}, \cr
 #' \code{\link{lsm_l_circle_mn}},

diff --git a/R/lsm_c_circle_sd.R b/R/lsm_c_circle_sd.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_mn}},
 #' \code{\link{lsm_c_circle_cv}}, \cr
 #' \code{\link{lsm_l_circle_mn}},

diff --git a/R/lsm_c_core_mn.R b/R/lsm_c_core_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_core}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_core_sd}},
 #' \code{\link{lsm_c_core_cv}}, \cr
 #' \code{\link{lsm_l_core_mn}},

diff --git a/R/lsm_c_core_sd.R b/R/lsm_c_core_sd.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_core}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_core_mn}},
 #' \code{\link{lsm_c_core_cv}}, \cr
 #' \code{\link{lsm_l_core_mn}},

diff --git a/R/lsm_c_dcore_mn.R b/R/lsm_c_dcore_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_ncore}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_dcore_sd}},
 #' \code{\link{lsm_c_dcore_cv}}, \cr
 #' \code{\link{lsm_l_dcore_mn}},

diff --git a/R/lsm_c_dcore_sd.R b/R/lsm_c_dcore_sd.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_ncore}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_dcore_mn}},
 #' \code{\link{lsm_c_dcore_cv}}, \cr
 #' \code{\link{lsm_l_dcore_mn}},

diff --git a/R/lsm_c_enn_mn.R b/R/lsm_c_enn_mn.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_enn}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_enn_sd}},
 #' \code{\link{lsm_c_enn_cv}}, \cr
 #' \code{\link{lsm_l_enn_mn}},

diff --git a/R/lsm_c_enn_sd.R b/R/lsm_c_enn_sd.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_enn}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_enn_mn}},
 #' \code{\link{lsm_c_enn_cv}}, \cr
 #' \code{\link{lsm_l_enn_mn}},

diff --git a/R/lsm_c_frac_mn.R b/R/lsm_c_frac_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_frac}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_frac_sd}},
 #' \code{\link{lsm_c_frac_cv}}, \cr
 #' \code{\link{lsm_l_frac_mn}},

diff --git a/R/lsm_c_frac_sd.R b/R/lsm_c_frac_sd.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_frac}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_frac_mn}},
 #' \code{\link{lsm_c_frac_cv}}, \cr
 #' \code{\link{lsm_l_frac_mn}},

diff --git a/R/lsm_c_gyrate_mn.R b/R/lsm_c_gyrate_mn.R
@@ -32,7 +32,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_gyrate}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_gyrate_sd}},
 #' \code{\link{lsm_c_gyrate_cv}}, \cr
 #' \code{\link{lsm_l_gyrate_mn}},

diff --git a/R/lsm_c_para_mn.R b/R/lsm_c_para_mn.R
@@ -27,7 +27,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_para}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_para_sd}},
 #' \code{\link{lsm_c_para_cv}}, \cr
 #' \code{\link{lsm_l_para_mn}},

diff --git a/R/lsm_c_para_sd.R b/R/lsm_c_para_sd.R
@@ -27,7 +27,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_para}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_para_mn}},
 #' \code{\link{lsm_c_para_cv}}, \cr
 #' \code{\link{lsm_l_para_mn}},

diff --git a/R/lsm_c_shape_mn.R b/R/lsm_c_shape_mn.R
@@ -24,7 +24,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_shape}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_shape_sd}},
 #' \code{\link{lsm_c_shape_cv}}, \cr
 #' \code{\link{lsm_l_shape_mn}},

diff --git a/R/lsm_c_shape_sd.R b/R/lsm_c_shape_sd.R
@@ -24,7 +24,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_shape}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_shape_mn}},
 #' \code{\link{lsm_c_shape_cv}}, \cr
 #' \code{\link{lsm_l_shape_mn}},

diff --git a/R/lsm_l_area_mn.R b/R/lsm_l_area_mn.R
@@ -25,7 +25,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_area}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_area_mn}},
 #' \code{\link{lsm_c_area_sd}},
 #' \code{\link{lsm_c_area_cv}} \cr

diff --git a/R/lsm_l_area_sd.R b/R/lsm_l_area_sd.R
@@ -23,7 +23,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_area}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_area_mn}},
 #' \code{\link{lsm_c_area_sd}},
 #' \code{\link{lsm_c_area_cv}} \cr

diff --git a/R/lsm_l_cai_mn.R b/R/lsm_l_cai_mn.R
@@ -30,7 +30,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_cai}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_cai_sd}},
 #' \code{\link{lsm_c_cai_sd}},
 #' \code{\link{lsm_c_cai_cv}}, \cr

diff --git a/R/lsm_l_cai_sd.R b/R/lsm_l_cai_sd.R
@@ -32,7 +32,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_cai}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_cai_mn}},
 #' \code{\link{lsm_c_cai_sd}},
 #' \code{\link{lsm_c_cai_cv}}, \cr

diff --git a/R/lsm_l_circle_cv.R b/R/lsm_l_circle_cv.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_mn}},
 #' \code{\link{lsm_c_circle_sd}},
 #' \code{\link{lsm_c_circle_cv}}, \cr

diff --git a/R/lsm_l_circle_mn.R b/R/lsm_l_circle_mn.R
@@ -25,7 +25,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_mn}},
 #' \code{\link{lsm_c_circle_sd}},
 #' \code{\link{lsm_c_circle_cv}}, \cr

diff --git a/R/lsm_l_circle_sd.R b/R/lsm_l_circle_sd.R
@@ -27,7 +27,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_circle}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_circle_mn}},
 #' \code{\link{lsm_c_circle_sd}},
 #' \code{\link{lsm_c_circle_cv}}, \cr

diff --git a/R/lsm_l_core_mn.R b/R/lsm_l_core_mn.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_core}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_core_mn}},
 #' \code{\link{lsm_c_core_sd}},
 #' \code{\link{lsm_c_core_cv}}, \cr

diff --git a/R/lsm_l_core_sd.R b/R/lsm_l_core_sd.R
@@ -29,7 +29,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_core}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_core_mn}},
 #' \code{\link{lsm_c_core_sd}},
 #' \code{\link{lsm_c_core_cv}}, \cr

diff --git a/R/lsm_l_dcore_mn.R b/R/lsm_l_dcore_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_ncore}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_dcore_mn}},
 #' \code{\link{lsm_c_dcore_sd}},
 #' \code{\link{lsm_c_dcore_cv}}, \cr

diff --git a/R/lsm_l_dcore_sd.R b/R/lsm_l_dcore_sd.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_ncore}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_dcore_mn}},
 #' \code{\link{lsm_c_dcore_sd}}, \cr
 #' \code{\link{lsm_c_dcore_cv}},

diff --git a/R/lsm_l_enn_mn.R b/R/lsm_l_enn_mn.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_enn}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_enn_mn}},
 #' \code{\link{lsm_c_enn_sd}},
 #' \code{\link{lsm_c_enn_cv}}, \cr

diff --git a/R/lsm_l_enn_sd.R b/R/lsm_l_enn_sd.R
@@ -28,7 +28,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_enn}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_enn_mn}},
 #' \code{\link{lsm_c_enn_sd}},
 #' \code{\link{lsm_c_enn_cv}}, \cr

diff --git a/R/lsm_l_frac_mn.R b/R/lsm_l_frac_mn.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_frac}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_frac_mn}},
 #' \code{\link{lsm_c_frac_sd}},
 #' \code{\link{lsm_c_frac_cv}}, \cr

diff --git a/R/lsm_l_frac_sd.R b/R/lsm_l_frac_sd.R
@@ -26,7 +26,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_frac}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_frac_mn}},
 #' \code{\link{lsm_c_frac_sd}},
 #' \code{\link{lsm_c_frac_cv}}, \cr

diff --git a/R/lsm_l_gyrate_mn.R b/R/lsm_l_gyrate_mn.R
@@ -32,7 +32,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_gyrate}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_gyrate_mn}},
 #' \code{\link{lsm_c_gyrate_sd}},
 #' \code{\link{lsm_c_gyrate_cv}}, \cr

diff --git a/R/lsm_l_para_mn.R b/R/lsm_l_para_mn.R
@@ -27,7 +27,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_para}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_para_mn}},
 #' \code{\link{lsm_c_para_sd}},
 #' \code{\link{lsm_c_para_cv}}, \cr

diff --git a/R/lsm_l_para_sd.R b/R/lsm_l_para_sd.R
@@ -27,7 +27,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_para}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_para_mn}},
 #' \code{\link{lsm_c_para_sd}},
 #' \code{\link{lsm_c_para_cv}}, \cr

diff --git a/R/lsm_l_shape_mn.R b/R/lsm_l_shape_mn.R
@@ -24,7 +24,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_shape}},
-#' \code{\link{mean}}, \cr
+#' \code{\link[base]{mean}}, \cr
 #' \code{\link{lsm_c_shape_mn}},
 #' \code{\link{lsm_c_shape_sd}},
 #' \code{\link{lsm_c_shape_cv}}, \cr

diff --git a/R/lsm_l_shape_sd.R b/R/lsm_l_shape_sd.R
@@ -24,7 +24,7 @@
 #'
 #' @seealso
 #' \code{\link{lsm_p_shape}},
-#' \code{\link{sd}}, \cr
+#' \code{\link[stats]{sd}} \cr
 #' \code{\link{lsm_c_shape_mn}},
 #' \code{\link{lsm_c_shape_sd}},
 #' \code{\link{lsm_c_shape_cv}}, \cr

diff --git a/R/window_lsm.R b/R/window_lsm.R
@@ -26,7 +26,7 @@
 #' @seealso
 #' \code{\link{list_lsm}} \cr
 #' \code{\link{calculate_lsm}} \cr
-#' \code{\link{focal}}
+#' \code{\link[terra]{focal}}
 #'
 #' @return list
 #'

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,5 +1,7 @@
 # landscapemetrics 2.1.3
-Improve documentation and minor bugfixes
+* Improve documentation and minor bugfixes
+* This is a re-submission. The below error has now been fixed
+`Please provide package anchors for all Rd \link{} targets`
 
 # landscapemetrics 2.1.2
 Minor bugfixes
@@ -19,13 +21,13 @@ Possibly misspelled words in DESCRIPTION: functionn (44:53)
 Major update removing dependency to raster and sp package
 
 # landscapemetrics 1.5.6
-This is a re-submission. The below error has now been fixed
+* This is a re-submission. The below error has now been fixed
 `Specified C++11: please drop specification unless essential`
-Remove dependencies
+* Remove dependencies
 
 # landscapemetrics 1.5.5
-- Improved user experience
-- Fix typo in Maintainer name
+* Improved user experience
+* Fix typo in Maintainer name
 
 # landscapemetrics 1.5.4
 Computational improvements