update qsbase URL

ChangeLog

@@ -6,11 +6,11 @@ Version 0.27.1 (2024-06-04)
    * Add function `set_trust_promises` to allow for serialization and deserialization of PROMSXP
 
 Version 0.26.3 (2024-05-15)
-   * When serializing, eval promises immediately (https://github.com/traversc/qs/issues/94)
-   * Return NULL and issue a warning when unserializing a PROMSXP (see https://github.com/traversc/qs/issues/93)
+   * When serializing, eval promises immediately (https://github.com/qsbase/qs/issues/94)
+   * Return NULL and issue a warning when unserializing a PROMSXP (see https://github.com/qsbase/qs/issues/93)
 
 Version 0.26.2 (2024-03-18)
-   * Change check for requiring `-latomic` flag to use `AC_COMPILE_IFELSE` (https://github.com/traversc/qs/issues/88, https://github.com/traversc/qs/issues/91, https://github.com/traversc/qs/issues/76)
+   * Change check for requiring `-latomic` flag to use `AC_COMPILE_IFELSE` (https://github.com/qsbase/qs/issues/88, https://github.com/qsbase/qs/issues/91, https://github.com/qsbase/qs/issues/76)
 
 Version 0.26.1 (2024-03-07)
    * Add ALTREP serialization
@@ -21,12 +21,12 @@ Version 0.25.7 (2023-12-05)
 
 Version 0.25.6 (2023-11-27)
    * Fix tests to account for ALTREP serialization
-   * Add filenames to error messages (https://github.com/traversc/qs/issues/75)
-   * Fix unit tests for big endian system (https://github.com/traversc/qs/issues/77)
-   * Check for GCC and add `-latomic` flag which is sometimes required (https://github.com/traversc/qs/issues/76)
+   * Add filenames to error messages (https://github.com/qsbase/qs/issues/75)
+   * Fix unit tests for big endian system (https://github.com/qsbase/qs/issues/77)
+   * Check for GCC and add `-latomic` flag which is sometimes required (https://github.com/qsbase/qs/issues/76)
 
 Version 0.25.5 (2023-2-20)
-   * Add function `qread_url`, a helper function that reads `qs` objects from the internet (https://github.com/traversc/qs/issues/49)
+   * Add function `qread_url`, a helper function that reads `qs` objects from the internet (https://github.com/qsbase/qs/issues/49)
    * Add `qattributes` function for extracting attributes of a saved object
 
 Version 0.25.4 (2022-8-9)
@@ -50,47 +50,47 @@ Version 0.25.1 (2021-7-20)
    * Remove `R_restoreHashCount` function, as it is not part of the new R API
 
 Version 0.24.4 (2021-3-13)
-   * Throw a proper error message for DBFS issues (https://github.com/traversc/qs/issues/51)
+   * Throw a proper error message for DBFS issues (https://github.com/qsbase/qs/issues/51)
 
 Version 0.24.3 (2021-3-8)
    * Add github actions to test compilation on different R versions
 
 Version 0.24.1 (2021-3-5)
    * Add additional error checks on failure to read or write data
    * Update xxhash version to 0.8.0
-   * Reduce R version requirement from R 3.5.0 to R 3.0.2 (https://github.com/traversc/qs/pull/36)
+   * Reduce R version requirement from R 3.5.0 to R 3.0.2 (https://github.com/qsbase/qs/pull/36)
 
 Version 0.23.6 (2020-2-7)
-   * Add BNDCELLS (aka immediate bindings) support added in R 4.0 (https://github.com/traversc/qs/issues/50)
+   * Add BNDCELLS (aka immediate bindings) support added in R 4.0 (https://github.com/qsbase/qs/issues/50)
 
 Version 0.23.5 (2020-12-9)
-   * Correct issue in `qsavem` function (https://github.com/traversc/qs/issues/46)
+   * Correct issue in `qsavem` function (https://github.com/qsbase/qs/issues/46)
 
 Version 0.23.4 (2020-10-8)
-   * Correct documentation of `qreadm` and `qsavem` functions (https://github.com/traversc/qs/issues/44)
+   * Correct documentation of `qreadm` and `qsavem` functions (https://github.com/qsbase/qs/issues/44)
 
 Version 0.23.3 (2020-9-24)
-   * Fix to https://github.com/traversc/qs/issues/43
+   * Fix to https://github.com/qsbase/qs/issues/43
 
 Version 0.23.1 (2020-7-14)
-   * Fix to `qsavem` / `qload` functions (https://github.com/traversc/qs/issues/39)
+   * Fix to `qsavem` / `qload` functions (https://github.com/qsbase/qs/issues/39)
    * Update xxhash bundled library to v0.7.4
 
 Version 0.22.1 (2020-5-31)
-   * Added `qsavem` and `qload`/`qreadm` functions for saving and reading multiple objects at once. Thanks to Bryce Chamberlain (https://github.com/traversc/qs/pull/36)
+   * Added `qsavem` and `qload`/`qreadm` functions for saving and reading multiple objects at once. Thanks to Bryce Chamberlain (https://github.com/qsbase/qs/pull/36)
    * `qs` now depends on R 3.5 and later. For earlier versions of R, use `remotes::install_github("traversc/qs@legacy")`
    * Improved alt-rep string functionality using the stringfish package (https://cran.r-project.org/package=stringfish)
 
 Version 0.21.2 (2020-3-8)
    * Added implementations of base 85 and base 91 ASCII encoding. See `?base91_encoding` and `?base85_encoding`
-   * Fixed a typo in the benchmarking code (https://github.com/traversc/qs/issues/32) and updated the readme benchmark to the latest version
-   * Added a more descriptive error when trying to read a non-existent file (https://github.com/traversc/qs/pull/34)
+   * Fixed a typo in the benchmarking code (https://github.com/qsbase/qs/issues/32) and updated the readme benchmark to the latest version
+   * Added a more descriptive error when trying to read a non-existent file (https://github.com/qsbase/qs/pull/34)
    * Compile LZ4 library in C++ instead of C to avoid U.B. issue (https://github.com/lz4/lz4/issues/847)
 
 Version 0.21.1 (2020-2-6)
-   * Fix for active bindings in R6/environments (https://github.com/traversc/qs/issues/29)
-   * Correct several documentation errors (https://github.com/traversc/qs/issues/28)
-   * Fix for incorrect serialization of "names" attribute in S4 Raster class (https://github.com/traversc/qs/issues/27)
+   * Fix for active bindings in R6/environments (https://github.com/qsbase/qs/issues/29)
+   * Correct several documentation errors (https://github.com/qsbase/qs/issues/28)
+   * Fix for incorrect serialization of "names" attribute in S4 Raster class (https://github.com/qsbase/qs/issues/27)
 
 Version 0.20.2 (2019-12-1)
    * Fix to minor bug involving serialization of locked environments
@@ -102,23 +102,23 @@ Version 0.20.1 (2019-12-1)
       * S4SXP (non-simple S4 objects with slots) are efficiently serialized, instead of previously relying on R serialization
 
 Version 0.19.1 (2019-9-2)
-   * Exposed C++ API for use in other Rcpp packages and Rcpp scripts (https://github.com/traversc/qs/issues/18)
+   * Exposed C++ API for use in other Rcpp packages and Rcpp scripts (https://github.com/qsbase/qs/issues/18)
 
 Version 0.18.4 (2019-8-22)
    * Fixed an rchk issue with a missing `PROTECT` call during serialization
    * Various code refactor and optimizations
 
 Version 0.18.3 (2019-8-20)
    * `qsave` now returns invisibly the number of bytes written to file
-   * Fixed an issue with deserialization of large S4 objects (https://github.com/traversc/qs/issues/14)
+   * Fixed an issue with deserialization of large S4 objects (https://github.com/qsbase/qs/issues/14)
    * Additional serialization and deserialization functions for advanced usage:
       * `qserialize` and `qdeserialize` reads and writes objects in memory to raw vectors
       * `qsave_fd` and `qread_fd` reads and write objects to file descriptors
       * `qsave_handle` and `qread_handle` reads and writes objects to Windows HANDLE pointer (Windows only)
       * `qread_ptr` reads objects from a void pointer
 
 Version 0.18.2 (2019-7-19)
-   * Changed license to GPL-3 (https://github.com/traversc/qs/issues/13)
+   * Changed license to GPL-3 (https://github.com/qsbase/qs/issues/13)
 
 Version 0.18.1 (2019-7-14)
    * Revised header format in order to include more information -- files created by 0.18.1 cannot by read by earlier versions
@@ -147,7 +147,7 @@ Version 0.16.3 (2019-6-21)
       * The goal is R should not crash even if a file is corrupted
 
 Version 0.16.2 (2019-6-15)
-   * Added `Set_elt` method for alt-rep string class (https://github.com/traversc/qs/issues/9)
+   * Added `Set_elt` method for alt-rep string class (https://github.com/qsbase/qs/issues/9)
    * Code cleanup:
       * Additional error checking during compression and de-compression
      * Use of RAII for protection stack handling
@@ -158,7 +158,7 @@ Version 0.16.1 (2019-5-15)
 
    * Support for zstd streaming interface.  As opposed to block compression routines, streaming compression offers better compression ratio but is not as fast
    * Re-factor configure script to not be so messy
-   * Changed file suffixes in examples from "q" to "qs" (https://github.com/traversc/qs/issues/5)
+   * Changed file suffixes in examples from "q" to "qs" (https://github.com/qsbase/qs/issues/5)
    * (Not included) brotli compression library was evaluated, but did not offer better performance compared to zstd on average
    * Updated zstd to version 1.4.0 (from 1.3.8) and lz4 to 1.9.1 (from 1.8.2)
    * Updated benchmarks to include zstd streaming interface and newer versions of zstd and lz4
@@ -170,7 +170,7 @@ Version 0.15.1 (2019-04-07)
    * Added support for lz4HC (high compression lz4 variant, but slower compression)
    * Additional error check handling to verify file integrity; see `qinspect` function
    * Additional documentation and examples
-   * Normalize file paths before attempting to write or read (https://github.com/traversc/qs/issues/4)
+   * Normalize file paths before attempting to write or read (https://github.com/qsbase/qs/issues/4)
    * Added star name database from the International Astronomical Union; see `?starnames`
 
 Version 0.14.1  (2019-03-03)

R/zz_help_files.R

@@ -15,7 +15,7 @@
 # along with this program. If not, see <https://www.gnu.org/licenses/>.
 #
 # You can contact the author at:
-#   https://github.com/traversc/qs
+#   https://github.com/qsbase/qs
 
 
 # Since roxygen2 doesn't parse the `@usage` block, it doesn't know what the usage is, and hence it doesn't find any parameters to inherit, so we can't rely on

README.md

@@ -1,7 +1,7 @@
 Using qs
 ================
 
-[![R-CMD-check](https://github.com/traversc/qs/workflows/R-CMD-check/badge.svg)](https://github.com/traversc/qs/actions)
+[![R-CMD-check](https://github.com/qsbase/qs/workflows/R-CMD-check/badge.svg)](https://github.com/qsbase/qs/actions)
 [![CRAN-Status-Badge](https://www.r-pkg.org/badges/version/qs)](https://cran.r-project.org/package=qs)
 [![CRAN-Downloads-Badge](https://cranlogs.r-pkg.org/badges/qs)](https://cran.r-project.org/package=qs)
 [![CRAN-Downloads-Total-Badge](https://cranlogs.r-pkg.org/badges/grand-total/qs)](https://cran.r-project.org/package=qs)

inst/extra_tests/correctness_testing_extended.R

@@ -124,7 +124,7 @@ for(i in 1:10) {
 rm(g1, g2, gb1, gb2)
 gc()
 
-print("github.com/traversc/qs/issues/9")
+print("github.com/qsbase/qs/issues/9")
 x <- data.table(x = 1:26, y = letters)
 qsave_rand(x, file=myfile)
 xu <- qread(myfile, use_alt_rep = T)
@@ -133,7 +133,7 @@ stopifnot(identical(c("a", "y"), colnames(xu)))
 data.table::setnames(xu, 2, "b")
 stopifnot(identical(c("a", "b"), colnames(xu)))
 
-print("github.com/traversc/qs/issues/23")
+print("github.com/qsbase/qs/issues/23")
 for(i in 1:10) {
   z <- data.table(x=nanotime(runif(1e6)*1e18))
   qsave_rand(z, file=myfile)
@@ -146,9 +146,9 @@ gc()
 
 
 # large S4 objects
-# https://github.com/traversc/qs/issues/14
+# https://github.com/qsbase/qs/issues/14
 # Data is private, so not uploaded online
-print("github.com/traversc/qs/issues/14 (this takes a long time)")
+print("github.com/qsbase/qs/issues/14 (this takes a long time)")
 if (Sys.info()[['sysname']] != "Windows") {
   system("cat /mnt/n/R_stuff/qs_extended_tests/issue_14_data.rds > /dev/null")
   r <- mcreadRDS("/mnt/n/R_stuff/qs_extended_tests/issue_14_data.rds")
@@ -172,9 +172,9 @@ gc()
 # gc()
 
 # Efficient serialization of ggplot objects
-# https://github.com/traversc/qs/issues/21
+# https://github.com/qsbase/qs/issues/21
 # Data is private, so not uploaded online
-print("github.com/traversc/qs/issues/21")
+print("github.com/qsbase/qs/issues/21")
 print("testing issue 21 no longer works because of deprecated plot object")
 # print("reading in initial data")
 # if (Sys.info()[['sysname']] != "Windows") {
@@ -204,7 +204,7 @@ print("testing issue 21 no longer works because of deprecated plot object")
 #   gc()
 # }
 
-print("https://github.com/traversc/qs/issues/6")
+print("https://github.com/qsbase/qs/issues/6")
 RiskModel <- R6Class(
   classname = "RiskModel",
   public = list(
@@ -237,7 +237,7 @@ for(i in 1:5) {
   gc()
 }
 
-print("https://github.com/traversc/qs/issues/27")
+print("https://github.com/qsbase/qs/issues/27")
 nx <- ny <- 2
 N <- nx * ny
 template <- raster(nrows = ny, ncols = nx, xmn = -nx / 2, xmx = nx / 2,
@@ -249,14 +249,14 @@ qsave(DEM, file = myfile)
 DEM2 <- qread(myfile)
 all.equal(DEM@legend@names, DEM2@legend@names)
 
-print("https://github.com/traversc/qs/issues/29")
+print("https://github.com/qsbase/qs/issues/29")
 XClass <- R6Class( "XClass", active = list(r=function() runif(1)) )
 x <- XClass$new()
 qsave(x, file=myfile)
 x2 <- qread(myfile)
 stopifnot(is.numeric(x2$r))
 
-print("https://github.com/traversc/qs/issues/43")
+print("https://github.com/qsbase/qs/issues/43")
 for(i in 1:200) {
   a <- paste0(rep(".", i), collapse = "")
   x <- list(a = a, # a= '....................................................................',
@@ -274,7 +274,7 @@ f2 <- compiler::cmpfun(function(x) { x <- x + 1.0; environment() })
 # .Internal(inspect(f3(TRUE))) # this doesn't work?
 
 
-print("https://github.com/traversc/qs/issues/50")
+print("https://github.com/qsbase/qs/issues/50")
 for(i in 1:200) {
   x2 <- qs::qdeserialize(qs::qserialize(f1(1L)))
   stopifnot(identical(x2$x, 2L))

src/BLOSC/shuffle_routines.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
  
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 /* The following shuffle routines were adapted from the Blosc meta-compression library 

src/extra_functions.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
 */
 
 // These are extra functions that are not directly related to qs serialization

src/qs_common.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 You can contact the author at:
-https://github.com/traversc/qs
+https://github.com/qsbase/qs
 */
 
 #ifndef QS_COMMON_H

src/qs_deserialization.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

src/qs_deserialization_stream.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

src/qs_deserialize_common.h

@@ -647,7 +647,7 @@ SEXP processBlock(T * const sobj) {
     // SET_OBJECT(obj, 1); // this flag seems kind of pointless
   }
   if( !trust_promises_global && (TYPEOF(obj) == PROMSXP)) {
-    Rcpp::warning("PROMSXP detected, replacing with NULL (see https://github.com/traversc/qs/issues/93)");
+    Rcpp::warning("PROMSXP detected, replacing with NULL (see https://github.com/qsbase/qs/issues/93)");
     return R_NilValue;
   } else {
     return obj;

src/qs_functions.cpp

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
 */
 
 #include "qs_common.h"

src/qs_mt_deserialization.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

src/qs_mt_serialization.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
  
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

src/qs_serialization.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
  
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

src/qs_serialization_stream.h

@@ -15,7 +15,7 @@
  along with this program.  If not, see <https://www.gnu.org/licenses/>.
  
  You can contact the author at:
- https://github.com/traversc/qs
+ https://github.com/qsbase/qs
  */
 
 #include "qs_common.h"

tests/correctness_testing.R

@@ -536,7 +536,7 @@ for (q in 1:reps) {
 # some one off tests
 
 # test 1: alt rep implementation
-# https://github.com/traversc/qs/issues/9
+# https://github.com/qsbase/qs/issues/9
 
 # stringfish character vectors -- require R > 3.5.0
 if (utils::compareVersion(as.character(getRversion()), "3.5.0") != -1) {

vignettes/vignette.rmd

@@ -16,7 +16,7 @@ IS_GITHUB <- Sys.getenv("IS_GITHUB") != ""
 
 ```{r results='asis', echo=FALSE, eval=IS_GITHUB}
 cat('
-[![R-CMD-check](https://github.com/traversc/qs/workflows/R-CMD-check/badge.svg)](https://github.com/traversc/qs/actions)
+[![R-CMD-check](https://github.com/qsbase/qs/workflows/R-CMD-check/badge.svg)](https://github.com/qsbase/qs/actions)
 [![CRAN-Status-Badge](https://www.r-pkg.org/badges/version/qs)](https://cran.r-project.org/package=qs)
 [![CRAN-Downloads-Badge](https://cranlogs.r-pkg.org/badges/qs)](https://cran.r-project.org/package=qs)
 [![CRAN-Downloads-Total-Badge](https://cranlogs.r-pkg.org/badges/grand-total/qs)](https://cran.r-project.org/package=qs)