Use RosettaSciIO and adapt to their IO plugin specification architecture #296
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| workflow_dispatch: | |
| workflow: '*' | |
| jobs: | |
| code: | |
| name: code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: psf/black@stable | |
| - name: Install Black with Jupyter extension | |
| run: | | |
| pip install black[jupyter] | |
| - name: Check code style of Jupyter notebooks | |
| run: | | |
| black --diff --line-length 77 doc/tutorials/*.ipynb | |
| # Make sure all necessary files are included in a release | |
| manifest: | |
| name: check manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install dependencies | |
| run: | | |
| pip install manifix | |
| - name: Check MANIFEST.in file | |
| run: | | |
| python setup.py manifix | |
| tests: | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }}${{ matrix.LABEL }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 15 | |
| env: | |
| MPLBACKEND: agg | |
| PYTEST_ARGS: --pyargs kikuchipy --reruns 2 -n 2 --cov=kikuchipy | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.10', '3.11'] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: 3.8 | |
| DEPENDENCIES: dask==2021.8.1 diffsims==0.5.1 hyperspy~=2.0.rc0 matplotlib==3.5 numba==0.55 numpy==1.21.6 orix==0.11.1 pooch==1.3.0 pyebsdindex==0.2 scikit-image==0.16.2 | |
| LABEL: -oldest | |
| - os: ubuntu-latest | |
| python-version: 3.11 | |
| LABEL: -minimum_requirement | |
| - os: ubuntu-latest | |
| python-version: 3.11 | |
| DEPENDENCIES: hyperspy~=2.0.rc0 | |
| LABEL: -hyperspy2.0 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies and package | |
| shell: bash | |
| run: | | |
| pip install wheel | |
| pip install -U -e .'[tests]' | |
| - name: Install special versions of dependencies | |
| if: ${{ contains(matrix.LABEL, 'oldest') || contains(matrix.Label, 'hyperspy-2.0') }} | |
| run: | | |
| pip install ${{ matrix.DEPENDENCIES }} | |
| - name: Install optional dependencies | |
| if: ${{ contains(matrix.LABEL, 'minimum_requirement') == false }} | |
| shell: bash | |
| run: | | |
| pip install -e .'[all]' | |
| pip install pyopencl | |
| - name: Display Python, pip and package versions | |
| run: | | |
| python -V | |
| pip -V | |
| pip list | |
| - name: Set up headless display necessary for PyVista on Linux | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install xvfb | |
| /sbin/ldconfig -p | grep stdc++ # Temporarily check location | |
| - name: Set up headless display necessary for PyVista on Windows | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| uses: pyvista/setup-headless-display-action@v1 | |
| - name: Run docstring tests | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| continue-on-error: true | |
| run: | | |
| xvfb-run pytest --doctest-modules --doctest-continue-on-failure --ignore-glob=kikuchipy/*/tests kikuchipy/*.py | |
| - name: Run tests in a virtual X server environment on Ubuntu | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install xvfb | |
| xvfb-run pytest ${{ env.PYTEST_ARGS }} | |
| - name: Run tests on Windows or macOS | |
| if: ${{ matrix.os != 'ubuntu-latest' }} | |
| run: | | |
| pytest ${{ env.PYTEST_ARGS }} | |
| - name: Generate line coverage | |
| run: | | |
| coverage report --show-missing | |
| - name: Upload coverage to Coveralls | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| coveralls-finish: | |
| needs: tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |