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Spatial flexure options #1855

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86d34a2
update for spatial flexure
rcooke-ast Aug 16, 2024
eb7e76e
update for spatial flexure
rcooke-ast Aug 16, 2024
de4d97a
argument rename: flexure -> spat_flexure
rcooke-ast Aug 16, 2024
b2bcc5f
argument rename: flexure -> spat_flexure
rcooke-ast Aug 16, 2024
9790a33
update spatial flexure
rcooke-ast Aug 16, 2024
3e83ecc
update spatial flexure arguments
rcooke-ast Aug 16, 2024
da607cd
update spatial flexure tests
rcooke-ast Aug 16, 2024
0a3affd
update spatial flexure tests
rcooke-ast Aug 17, 2024
41cad85
update spatial flexure
rcooke-ast Aug 17, 2024
da18826
masked value for metadata
rcooke-ast Aug 17, 2024
888a754
allow ndarray for flexure
rcooke-ast Aug 17, 2024
e3f6122
update spec2d for flexure
rcooke-ast Aug 17, 2024
65b84b9
array spatial flexure during findobj
rcooke-ast Aug 17, 2024
0802abf
speed up fit2tilts when only calculating one slit at a time.
rcooke-ast Aug 17, 2024
8f67040
speed up fit2tilts when only calculating one slit at a time.
rcooke-ast Aug 17, 2024
233a03f
speed up fit2tilts when only calculating one slit at a time.
rcooke-ast Aug 17, 2024
b2f56e2
fix None spatflex
rcooke-ast Aug 18, 2024
c86977d
fix spatial flexure in spectrographs
rcooke-ast Aug 18, 2024
0183a91
allow fits.gz
rcooke-ast Aug 18, 2024
d8fe596
Merge branch 'filesearch' into spatflex_options
rcooke-ast Aug 18, 2024
70d2925
fix tests
rcooke-ast Aug 19, 2024
a8c6940
update docstring
rcooke-ast Aug 20, 2024
e4d5ed3
spatial flexure for skymask
rcooke-ast Aug 20, 2024
c4c01a9
Merge branch 'filesearch' into spatflex_options
rcooke-ast Aug 20, 2024
6dfb0cd
update release notes for spatial flexure
rcooke-ast Aug 20, 2024
0588d2e
fix for when spat_flexure is None
rcooke-ast Aug 20, 2024
6d687c4
fix tests
rcooke-ast Aug 21, 2024
e9221d3
Merge branch 'develop' into spatflex_options
rcooke-ast Sep 2, 2024
f2d31fd
update for edge specific spatial flexure
rcooke-ast Sep 2, 2024
fe676ae
update for edge specific spatial flexure
rcooke-ast Sep 2, 2024
b059e9a
Merge branch 'bh3_support' into spatflex_options
rcooke-ast Sep 3, 2024
3e3eaa6
Merge branch 'uves_popler' into spatflex_options
rcooke-ast Sep 3, 2024
0fe9901
UVES_popler updates
rcooke-ast Sep 4, 2024
f399958
Merge branch 'develop' into spatflex_options
rcooke-ast Sep 11, 2024
6bfa9fa
updated users
rcooke-ast Sep 11, 2024
13daa62
corrected spatial flexure in flatfield
rcooke-ast Sep 11, 2024
e4f42d1
doc update
kbwestfall Sep 20, 2024
25a0737
PR cleanup
rcooke-ast Sep 20, 2024
73d0afb
fix tilt shape
rcooke-ast Sep 20, 2024
78120d8
update users
rcooke-ast Sep 20, 2024
4e8f629
Merge branch 'develop' into spatflex_options
rcooke-ast Oct 2, 2024
14c55cb
Merge remote-tracking branch 'origin/order_sync' into spatflex_options
rcooke-ast Oct 2, 2024
4f5fa09
merge with order_sync
rcooke-ast Oct 2, 2024
7755dee
review comments addressed
rcooke-ast Oct 2, 2024
77cf107
updated flexure docs
rcooke-ast Oct 2, 2024
16847ef
update for flexure refactor
rcooke-ast Oct 2, 2024
be45f42
Merge branch 'order_sync' into spatflex_options
rcooke-ast Oct 9, 2024
2f3eb13
masked flexure
rcooke-ast Oct 10, 2024
731bb3f
manual flexure
rcooke-ast Oct 10, 2024
09c5497
mv manual flexure to rawimage
rcooke-ast Oct 10, 2024
872dbec
mv manual flexure to rawimage
rcooke-ast Oct 10, 2024
e8f1426
flexure only for when slits is not None
rcooke-ast Oct 10, 2024
e5112b1
flexure only for when slits is not None
rcooke-ast Oct 10, 2024
f48c767
deal with masked values
rcooke-ast Oct 11, 2024
11e2100
masked manual extraction
rcooke-ast Oct 11, 2024
30022e3
testing
rcooke-ast Oct 12, 2024
4e10c8b
masked header cards
rcooke-ast Oct 12, 2024
e80f42e
masked header cards
rcooke-ast Oct 12, 2024
0056842
masked header cards
rcooke-ast Oct 12, 2024
06b95d5
Update pypeit/calibrations.py
rcooke-ast Oct 15, 2024
8dbf228
update docstrings
rcooke-ast Oct 15, 2024
0dce8e9
consistent setting of pixel indices
rcooke-ast Oct 15, 2024
d8f5293
Merge pull request #1860 from pypeit/spatflex_redoshift
rcooke-ast Oct 15, 2024
deae010
Merge branch 'order_sync' into spatflex_options
kbwestfall Oct 29, 2024
66aa7c4
Merge branch 'release' into spatflex_options
kbwestfall Nov 6, 2024
668e6d5
doc update
kbwestfall Nov 6, 2024
ab688f4
Merge branch 'dev2rel' into spatflex_options
rcooke-ast Nov 17, 2024
3fefeab
Merge branch 'develop' into spatflex_options
rcooke-ast Nov 21, 2024
7dd2fa6
Merge branch 'develop' into spatflex_options
kbwestfall Dec 19, 2024
373e3c9
Merge branch 'develop' into spatflex_options
rcooke-ast Dec 20, 2024
797f20e
fix merge problems
rcooke-ast Dec 20, 2024
c954a3f
no method variable needed
rcooke-ast Dec 20, 2024
ea6961d
fix merge tilts bug
rcooke-ast Dec 20, 2024
5a4c0c4
convert to spat_flexure
rcooke-ast Dec 21, 2024
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Merge branch 'release' into spatflex_options
  • Loading branch information
kbwestfall committed Nov 6, 2024
commit 66aa7c4092ce287fa22b95d90fd9993d316d0f5c
1 change: 1 addition & 0 deletions MANIFEST.in
Original file line number Diff line number Diff line change
@@ -17,6 +17,7 @@ global-exclude *.pyc *.o *.so *.DS_Store *.ipynb
# update the defined_paths dictionary in pypeit.pypeitdata.PypeItDataPaths!
recursive-exclude pypeit/data/arc_lines/reid_arxiv *.fits *.json *.pdf *.tar.gz
recursive-exclude pypeit/data/arc_lines/NIST *.ascii
recursive-exclude pypeit/data/pixelflats *.fits.gz
recursive-exclude pypeit/data/sensfuncs *.fits
recursive-exclude pypeit/data/skisim *.dat
recursive-exclude pypeit/data/standards *.gz *.fits *.dat
2 changes: 1 addition & 1 deletion doc/help/run_pypeit.rst
Original file line number Diff line number Diff line change
@@ -4,7 +4,7 @@
usage: run_pypeit [-h] [-v VERBOSITY] [-r REDUX_PATH] [-m] [-s] [-o] [-c]
pypeit_file

## PypeIt : The Python Spectroscopic Data Reduction Pipeline v1.16.1.dev95+g35e103c10
## PypeIt : The Python Spectroscopic Data Reduction Pipeline v1.16.1.dev635+g9540496b9
##
## Available spectrographs include:
## aat_uhrf, bok_bc, gemini_flamingos1, gemini_flamingos2,
4 changes: 2 additions & 2 deletions doc/pypeit_par.rst
Original file line number Diff line number Diff line change
@@ -482,8 +482,8 @@ Key Type Options
``echelle_pad`` int .. 3 Number of orders by which to pad the echellogram reference in the echelle method. Values > 0 allow for some error in the reddest order guess, but require sufficient reference orders.
``frac_rms_thresh`` float .. 1.5 For echelle spectrographs (i.e., ``echelle=True``), this is the fractional change in the RMS threshold used when a 1D fit is re-attempted for failed orders.
``func`` str .. ``legendre`` Function used for wavelength solution fits
``fwhm`` int, float .. 4.0 Spectral sampling of the arc lines. This is the FWHM of an arcline in binned pixels of the input arc image
``fwhm_fromlines`` bool .. True Estimate spectral resolution in each slit using the arc lines. If True, the estimated FWHM will override ``fwhm`` only in the determination of the wavelength solution (including the calculation of the threshold for the solution RMS, see ``rms_thresh_frac_fwhm``), but not for the wave tilts calibration.
``fwhm`` int, float .. 4.0 Spectral sampling of the arc lines. This is the FWHM of an arcline in binned pixels of the input arc image. Note that this is used also in the wave tilts calibration.
``fwhm_fromlines`` bool .. True Estimate spectral resolution in each slit using the arc lines. If True, the estimated FWHM will override ``fwhm`` in the determination of the wavelength solution (including the calculation of the threshold for the solution RMS, see ``rms_thresh_frac_fwhm``), and ALSO for the wave tilts calibration.
``fwhm_spat_order`` int .. 0 This parameter determines the spatial polynomial order to use in the 2D polynomial fit to the FWHM of the arc lines. See also, fwhm_spec_order.
``fwhm_spec_order`` int .. 1 This parameter determines the spectral polynomial order to use in the 2D polynomial fit to the FWHM of the arc lines. See also, fwhm_spat_order.
``lamps`` list .. .. Name of one or more ions used for the wavelength calibration. Use ``None`` for no calibration. Choose ``use_header`` to use the list of lamps recorded in the header of the arc frames (this is currently available only for Keck DEIMOS, Keck LRIS, MMT Blue Channel, and LDT DeVeny).
158 changes: 0 additions & 158 deletions doc/releases/1.16.1dev.rst

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