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.WIP Remove MarginalModel in favor of model transform
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ricardoV94 committed Nov 11, 2024
1 parent d447e0e commit d8c93e5
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Showing 5 changed files with 440 additions and 616 deletions.
54 changes: 53 additions & 1 deletion pymc_experimental/model/marginal/distributions.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,17 +4,19 @@
import pytensor.tensor as pt

from pymc.distributions import Bernoulli, Categorical, DiscreteUniform
from pymc.distributions.distribution import _support_point, support_point
from pymc.logprob.abstract import MeasurableOp, _logprob
from pymc.logprob.basic import conditional_logp, logp
from pymc.pytensorf import constant_fold
from pytensor import Variable
from pytensor.compile.builders import OpFromGraph
from pytensor.compile.mode import Mode
from pytensor.graph import Op, vectorize_graph
from pytensor.graph import FunctionGraph, Op, vectorize_graph
from pytensor.graph.replace import clone_replace, graph_replace
from pytensor.scan import map as scan_map
from pytensor.scan import scan
from pytensor.tensor import TensorVariable
from pytensor.tensor.random.type import RandomType

from pymc_experimental.distributions import DiscreteMarkovChain

Expand Down Expand Up @@ -44,6 +46,56 @@ def support_axes(self) -> tuple[tuple[int]]:
return tuple(support_axes_vars)


@_support_point.register
def support_point_marginal_rv(op: MarginalRV, rv, *inputs):
"""Support point for a marginalized RV.
The support point of a marginalized RV is the support point of the inner RV,
conditioned on the marginalized RV taking its support point.
"""
outputs = rv.owner.outputs

inner_rv = op.inner_outputs[outputs.index(rv)]
marginalized_inner_rv, *other_dependent_inner_rvs = (
out
for out in op.inner_outputs
if out is not inner_rv and not isinstance(out.type, RandomType)
)

# Replace references to inner rvs by the dummy variables (including the marginalized RV)
# This is necessary because the inner RVs may depend on each other
marginalized_inner_rv_dummy = marginalized_inner_rv.clone()
other_dependent_inner_rv_to_dummies = {
inner_rv: inner_rv.clone() for inner_rv in other_dependent_inner_rvs
}
inner_rv = clone_replace(
inner_rv,
replace={marginalized_inner_rv: marginalized_inner_rv_dummy}
| other_dependent_inner_rv_to_dummies,
)

# Get support point of inner RV and marginalized RV
inner_rv_support_point = support_point(inner_rv)
marginalized_inner_rv_support_point = support_point(marginalized_inner_rv)

replacements = [
# Replace the marginalized RV dummy by its support point
(marginalized_inner_rv_dummy, marginalized_inner_rv_support_point),
# Replace other dependent RVs dummies by the respective outer outputs.
# PyMC will replace them by their support points later
*(
(v, outputs[op.inner_outputs.index(k)])
for k, v in other_dependent_inner_rv_to_dummies.items()
),
# Replace outer input RVs
*zip(op.inner_inputs, inputs),
]
fgraph = FunctionGraph(outputs=[inner_rv_support_point], clone=False)
fgraph.replace_all(replacements, import_missing=True)
[rv_support_point] = fgraph.outputs
return rv_support_point


class MarginalFiniteDiscreteRV(MarginalRV):
"""Base class for Marginalized Finite Discrete RVs"""

Expand Down
10 changes: 7 additions & 3 deletions pymc_experimental/model/marginal/graph_analysis.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
from itertools import zip_longest

from pymc import SymbolicRandomVariable
from pymc.model.fgraph import ModelVar
from pytensor.compile import SharedVariable
from pytensor.graph import Constant, Variable, ancestors
from pytensor.graph.basic import io_toposort
Expand Down Expand Up @@ -35,12 +36,12 @@ def static_shape_ancestors(vars):

def find_conditional_input_rvs(output_rvs, all_rvs):
"""Find conditionally indepedent input RVs."""
blockers = [other_rv for other_rv in all_rvs if other_rv not in output_rvs]
blockers += static_shape_ancestors(tuple(all_rvs) + tuple(output_rvs))
other_rvs = [other_rv for other_rv in all_rvs if other_rv not in output_rvs]
blockers = other_rvs + static_shape_ancestors(tuple(all_rvs) + tuple(output_rvs))
return [
var
for var in ancestors(output_rvs, blockers=blockers)
if var in blockers or (var.owner is None and not isinstance(var, Constant | SharedVariable))
if var in other_rvs
]


Expand Down Expand Up @@ -141,6 +142,9 @@ def _subgraph_batch_dim_connection(var_dims: VAR_DIMS, input_vars, output_vars)
# None of the inputs are related to the batch_axes of the input_vars
continue

elif isinstance(node.op, ModelVar):
var_dims[node.outputs[0]] = inputs_dims[0]

elif isinstance(node.op, DimShuffle):
[input_dims] = inputs_dims
output_dims = tuple(None if i == "x" else input_dims[i] for i in node.op.new_order)
Expand Down
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