Add "Phenotype score" column on reference pages

Only show the column if data is available.

Refs #2029

src/app/annotation-sub-table/annotation-sub-table.component.html

@@ -53,6 +53,7 @@
         <th *ngIf="showColumn['genotype_background'] && !featureInFirstColumn">Background</th>
         <th *ngIf="showColumn['transcripts']">Transcript ID</th>
         <th *ngIf="showColumn['evidence']">Evidence</th>
+        <th *ngIf="showColumn['annotation_phenotype_score']">Phenotype score</th>
         <th *ngIf="showColumn['conditions']">Conditions</th>
         <th *ngIf="showColumn['qualifiers']">Qualifiers</th>
         <th *ngIf="showColumn['term-xref']">Source</th>
@@ -182,6 +183,11 @@
             </span>
           </span>
         </td>
+        <td *ngIf="showColumn['annotation_phenotype_score']">
+          <div *ngIf="annotation.annotation_phenotype_score">
+            {{annotation.annotation_phenotype_score}}
+          </div>
+        </td>
         <td *ngIf="showColumn['conditions']">
           <ul class="conditions">
           <li *ngFor="let conditionAndDetail of annotation.condition_details">

src/app/annotation-sub-table/annotation-sub-table.component.ts

@@ -278,6 +278,18 @@ export class AnnotationSubTableComponent implements OnInit, OnChanges {
     }
   }
 
+  hasPhenotypeScores(): boolean {
+    for (const termAnnotation of this.annotationTable) {
+      for (const annotation of termAnnotation.annotations) {
+        if (annotation.annotation_phenotype_score) {
+          return true;
+        }
+      }
+    }
+
+    return false;
+  }
+
   init() {
     this.termNameColSpan = -1;
 
@@ -289,6 +301,18 @@ export class AnnotationSubTableComponent implements OnInit, OnChanges {
       }
     }
 
+    if (typeConfig.columns_to_show_by_page_type &&
+        typeConfig.columns_to_show_by_page_type[this.scope]) {
+      for (let columnName of typeConfig.columns_to_show_by_page_type[this.scope]) {
+        this.showColumn[columnName] = true;
+      }
+    }
+
+    if (this.showColumn['annotation_phenotype_score'] && !this.hasPhenotypeScores()) {
+      // hide the column if there aren't any
+      this.showColumn['annotation_phenotype_score'] = false;
+    }
+
     if (this.hideColumns) {
       for (let columnName of this.hideColumns) {
         this.showColumn[columnName] = false;

src/app/config.ts

@@ -461,6 +461,7 @@ export interface AnnotationType {
   inherits_from?: string;
   split_by_parents?: Array<SplitByParentsConfig>;
   columns_to_show?: Array<string>;
+  columns_to_show_by_page_type?: { [column_name: string]: Array<string> };
   details_only?: boolean;
   // if true, don't automatically show a gene page section for this type
   no_gene_details_section?: boolean;

src/app/pombase-api.service.ts

@@ -182,6 +182,7 @@ export interface Annotation {
   transcripts: Array<TranscriptDetails>;
   reference: ReferenceShort;
   evidence?: string;
+  annotation_phenotype_score?: string;
   conditions: Array<TermShort>;
   condition_details: Array<[TermShort, String]>;
   assigned_by: string|undefined;