Process canto_approver_orcid pubprop

Store in ReferenceDetails and write to APICURON JSON file. Refs pombase/pombase-chado#1013
pombase · Oct 24, 2023 · 8dc8234 · 8dc8234
1 parent 2da6d55
commit 8dc8234
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Showing 3 changed files with 25 additions and 11 deletions.
diff --git a/src/pombase/data_types.rs b/src/pombase/data_types.rs
@@ -554,6 +554,8 @@ pub struct ReferenceDetails {
     #[serde(skip_serializing_if="Option::is_none")]
     pub canto_approved_date: Option<FlexStr>,
     #[serde(skip_serializing_if="Option::is_none")]
+    pub canto_approver_orcid: Option<FlexStr>,
+    #[serde(skip_serializing_if="Option::is_none")]
     pub canto_session_submitted_date: Option<FlexStr>,
     #[serde(skip_serializing_if="Option::is_none")]
     pub canto_added_date: Option<FlexStr>,

diff --git a/src/pombase/web/data.rs b/src/pombase/web/data.rs
@@ -1519,22 +1519,30 @@ impl WebData {
 
             let timestamp = flex_fmt!("{}T{}.000Z", approved_date, approved_time);
 
-            let mut add_record = |annotation_curator: &AnnotationCurator, activity_term: FlexStr| {
-                if let Some(ref curator_orcid) = annotation_curator.orcid {
-                    curation_reports.push(ApicuronReport {
-                        activity_term,
-                        curator_orcid: curator_orcid.clone(),
-                        timestamp: timestamp.clone(),
-                        entity_uri: flex_fmt!("{}/reference/{}", config.base_url, ref_details.uniquename),
-                    });
-                }
+            let mut add_record = |orcid: &FlexStr, activity_term: FlexStr| {
+                curation_reports.push(ApicuronReport {
+                    activity_term,
+                    curator_orcid: orcid.clone(),
+                    timestamp: timestamp.clone(),
+                    entity_uri: flex_fmt!("{}/reference/{}", config.base_url, ref_details.uniquename),
+                });
             };
 
+            let mut maybe_add_record =
+                |annotation_curator: &AnnotationCurator, activity_term: FlexStr| {
+                    if let Some(ref curator_orcid) = annotation_curator.orcid {
+                        add_record(curator_orcid, activity_term);
+                    }
+                };
+
             for annotation_curator in &ref_details.annotation_curators {
-                add_record(&annotation_curator, flex_str!("publication_curated"));
+                maybe_add_record(&annotation_curator, flex_str!("publication_curated"));
             }
             for annotation_curator in &ref_details.annotation_file_curators {
-                add_record(&annotation_curator, flex_str!("provided_dataset"));
+                maybe_add_record(&annotation_curator, flex_str!("provided_dataset"));
+            }
+            if let Some(ref canto_approver_orcid) = ref_details.canto_approver_orcid {
+                add_record(canto_approver_orcid, flex_str!("approved_publication"));
             }
         }
 

diff --git a/src/pombase/web/data_build.rs b/src/pombase/web/data_build.rs
@@ -1484,6 +1484,7 @@ phenotypes, so just the first part of this extension will be used:
             let mut canto_curator_name: Option<FlexStr> = None;
             let mut canto_first_approved_date: Option<FlexStr> = None;
             let mut canto_approved_date: Option<FlexStr> = None;
+            let mut canto_approver_orcid: Option<FlexStr> = None;
             let mut canto_added_date: Option<FlexStr> = None;
             let mut canto_session_submitted_date: Option<FlexStr> = None;
             let mut annotation_curators = vec![];
@@ -1516,6 +1517,8 @@ phenotypes, so just the first part of this extension will be used:
                         canto_first_approved_date = Some(prop.value.clone()),
                     "canto_approved_date" =>
                         canto_approved_date = Some(prop.value.clone()),
+                    "canto_approver_orcid" =>
+                        canto_approver_orcid = Some(prop.value.clone()),
                     "canto_added_date" =>
                         canto_added_date = Some(prop.value.clone()),
                     "canto_session_submitted_date" =>
@@ -1634,6 +1637,7 @@ phenotypes, so just the first part of this extension will be used:
                                        canto_curator_name,
                                        canto_first_approved_date,
                                        canto_approved_date,
+                                       canto_approver_orcid,
                                        canto_session_submitted_date,
                                        canto_added_date,
                                        annotation_curators,