piranhaGUI v1.6.0

Packaged with piranha v1.3.1: https://github.com/polio-nanopore/piranha/releases/tag/1.3.1

Installation on Mac

For the Mac version, download the PiranhaGUIv1.6.0_macos.zip file extract it and drag the piranhaGUIv1.6.0.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.6.0.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Release Notes

• Added progress bar while piranha is running
• User will now be notified when a new version of piranhaGUI is available
• User will now be notified if using piranha image is a version incompatible with this version of piranhaGUI
• Reworked run editing to include run name, user, institute, notes
• Added ability to read in excel samples and pre-fill fields as specified from excel template
• Will now search for reads directory and set run name based on directory names
• Added detection of correct column for barcode, sample in samples css/excel
• Other fields in samples csv/excel are now passed on to piranha
• Language selected for the GUI is now also used for report
• Added persistent options for piranha in addition to temporary options
• Added greying out buttons to make interface more intuitive

Full Changelog: v1.5.3...1.6.0

v1.5.4-prerelease

Packaged with piranha v1.2.2: https://github.com/polio-nanopore/piranha/releases/tag/1.2.2

Installation on Mac

For the Mac version, download the PiranhaGUIv1.5.4pre.zip file extract it and drag the piranhaGUIv1.5.4pre.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.5.4pre.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Release Notes

• Added progress bar while piranha is running
• User will now be notified when a new version of piranhaGUI is available
• User will now be notified if using piranha image is a version incompatible with this version of piranhaGUI
• Reworked run editing to include run name, user, institute, notes
• Added ability to read in excel samples and pre-fill fields as specified from excel template
• Will now search for reads directory and set run name based on directory names
• Added detection of correct column for barcode, sample in samples css/excel
• Other fields in samples csv/excel are now passed on to piranha
• Language selected for the GUI is now also used for report
• Small changes to options menu

Full Changelog: v1.5.3...v1.5.4-prerelease

v1.5.3

Packaged with piranha v1.2.1: https://github.com/polio-nanopore/piranha/releases/tag/1.2.1

Installation on Mac

For the Mac version, download the PiranhaGUIv1.5.3.zip file extract it and drag the piranhaGUIv1.5.3.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.5.3.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Full Changelog: v1.5.1...v1.5.3

v1.5.1

Installation on Mac

For the Mac version, download the PiranhaGUIv1.5.1.zip file extract it and drag the piranhaGUIv1.5.1.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.5.0.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Release Notes

• Image now inbuilt with installation on Mac and Windows
• Documentation updates
• Fixed broken Mac release

Full Changelog: v.1.5.0...v1.5.1

v.1.5.0

Installation on Mac

For the Mac version, drag the PiranhaGUI.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.5.0.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Release notes:

• Major changes to colour scheme and layout
• Defaults shown in options menus
• Added option to hide rampart
• added About window

Full Changelog: v1.3.6...v1.5.0

PiranhaGUI v1.4.0

Installation on Mac

For the Mac version, drag the PiranhaGUI.app icon into your Applications folder.
The first time you run it, right-click or control-click on the icon and select Open - this will the allow you to agree to run it. After this, you just need to double-click the icon.
It also requires you to install Docker Desktop from https://www.docker.com/products/docker-desktop/
You may also need to select the Allow the default Docker socket to be used option from Docker Desktop settings (under Advanced).

Installation on Linux

To install on Linux download the Debian/Ubuntu compatible .deb package. It can installed using Ubuntu's built-in application installer GUI, or by running:

sudo apt install /path/to/file/piranhaGUI_1.4.0.deb

Installation on Windows

Download the Windows installer and double click to run the installer.

Release notes:

• Added automatically checking for updates to images
• Added options for piranha
• Layout adjustments
  Full Changelog: v1.3.6...v1.4.0