Configurable categories for grouping by, configurable header fields in detailed csv- but dynamically picks. #217

Merged

aineniamh merged 23 commits intomainfrom ev-dev

Jan 29, 2024

+223-72

Commits on Dec 14, 2023

adding config for model
aineniamh
committed
setting up code for configurable match fields
aineniamh
committed
passing match field through functions now so it can be configured. only allow wibble check if using the default ddns group value for match group
aineniamh
committed
new command line arg for ref group field
aineniamh
committed
ref group field change from match
aineniamh
committed
all change to group from match
aineniamh
committed
grabbing group field from config and pass through to parsing function, add mapq to fxn rather than via params
aineniamh
committed
adding a qc check that checks there is the reference group field specified present in all reference fasta records
aineniamh
committed
match to field
aineniamh
committed

Commits on Jan 29, 2024