return/delete files changed during dev

polio-nanopore · Nov 3, 2023 · d3b1050 · d3b1050
1 parent b790d4a
commit d3b1050
Show file tree

Hide file tree

Showing 3 changed files with 19 additions and 0 deletions.
diff --git a/piranha/test/pak_run.tar.gz b/piranha/test/pak_run.tar.gz
diff --git a/piranha/test/supp_metadata.csv b/piranha/test/supp_metadata.csv
@@ -0,0 +1,7 @@
+sequence_name,reference_group,lineage,location
+1175|VDPV,Sabin2-related,VDPV_lineageA,Edinburgh
+1176|VDPV,Sabin2-related,VDPV_lineageB,Edinburgh
+1177|VDPV,Sabin3-related,VDPV_lineageB,Islamabad
+1178|VDPV,Sabin3-related,VDPV_lineageA,Lahore
+1179|VDPV,Sabin3-related,VDPV_lineageA,Islamabad
+1180|VDPV,Sabin2-related,,Edinburgh
diff --git a/piranha/test/supp_seqs.fasta b/piranha/test/supp_seqs.fasta
@@ -0,0 +1,12 @@
+>1175|VDPV display_name=Sabin2-related
+GGAATTGGTGACATGATTGAGGGGGCTGTTGAAGGAATTACTAAAAATGCATTAGCTNCCCCGACTTCCACCAATAGCCTGCCTAACACAGAGCCGAGCGGTCCAGCCCACTCCAAGGAGATACCTGCATTGACAGCCGTGGAGACAGGGGCCACCAATCCGTTGGTGCCTTCGGACACCGTGCAAACGCGCCATGTCATTCAGAGACGGACGCGATCAGAGTCCACGGTTGAGTCGTTCTTTGCAAGAGGGGCTTGCGTGGCTATCATTGAAGTGGACAATGATGCGCCAACGAAGCGCGCCAGCAGATTGTTTTCGGTTTGGAAAATAACTTACAAAGATACTGTTCAGCTGAGACGCAAACTGGAATTTTTCACATATTCGAGATTTGACATGGAGTTCACTTTTGTGGTCACCTCAAACTACACTGATGCAAATAACGGACATGCATTGAACCAGGTTTATCAGATAATGTATATACCACCCGGAGCACCTATCCCTGGCAAATGGAATGACTATACGTGGCAGACGTCCTCCAACCCGTCGGTGTTTTACACCTATGGGGCGCCCCCAGCAAGAATATCAGTGCCCTACGTGGGAATTGCTAATGCGTATTCCCACTTTTATGATGGGTTCGCAAAGGTACCACTAGCGGGTCAAACCTCAACTGAAGGCGATTCGTTGTACGGTGCTGCCTCATTGAATGATTTTGGATCACTGGCTGTTCGCGTGGTAAATGATCATAACCCCACGCGGCTCACCTCCAAGATCAGAGTGTACATGAAGCCAAAGCATGTCAGAGTCTGGTGCCCACGACCTCCACGAGTAGTTCCATACTTCGGACCAGGTGTTGATTATAAAGATGGGCTCACCCCACTACCAGAAAAGGGATTAACGACTTAT
+>1176|VDPV display_name=Sabin2-related
+NGGATTGGTGACATGATTGAGGGGGCTGTTGAAGGAATTACTAAAAATGCATTAGCTNCCCCGACTTCCACCAATAGCCTGCCTAACACAGAGCCGAGCGGTCCAGCCCACTCCAAGGAGATACCTGCATTGACAGCCGTGGAGACAGGGGCCACCAATCCGTTGGTGCCTTCGGACACCGTGCAAACGCGCCATGTCATTCAGAGACGGACGCGATCAGAGTCCACGGTTGAGTCGTTCTTTGCAAGAGGGGCTTGCGTGGCTATCATTGAAGTGGACAATGATGCGCCAACGAAGCGCGCCAGCAGATTGTTTTCGGTTTGGAAAATAACTTACAAAGATACTGTTCAGCTGAGACGCAAACTGGAATTTTTCACATATTCGAGATTTGACATGGAGTTCACTTTTGTGGTCACCTCAAACTACACTGATGCAAATAACGGACATGCATTGAACCAGGTTTATCAGATAATGTATATACCACCCGGAGCACCTATCCCTGGCAAATGGAATGACTATACGTGGCAGACGTCCTCCAACCCGTCGGTGTTTTACACCTATGGGGCGCCCCCAGCAAGAATATCAGTGCCCTACGTGGGAATTGCTAATGCGTATTCCCACTTTTATGATGGGTTCGCAAAGGTACCACTAGCGGGTCAAACCTCAACTGAAGGCGATTCGTTGTACGGTGCTGCCTCATTGAATGATTTTGGATCACTGGCTGTTCGCGTGGTAAATGATCATAACCCCACGCGGCTCACCTCCAAGATCAGAGTGTACATGAAGCCAAAGCATGTCAGAGTCTGGTGCCCACGACCTCCACGAGTAGTTCCATACTTCGGACCAGGTGTTGATTATAAAGATGGGCTCACCCCACTACCAGAAAAGGGATTAACGACTTAT
+>1177|VDPV display_name=Sabin3-related
+GGTATTGAAGATTTGATCCCTGAAGTTGCACAGGGCGCCCTAACTTTGTCACTCCCGAAGCAACAGGATAGCTTACCTGATACTAAGGCCAGTGGCCCGGCGCATTCCAAGGAGGTACCTGCACTCACTGCAGTCGAGACTGGAGCCACCAATCCTCTGGTACCATCCGACACAGTTCAAACGCGCCACGTAGTCCAACGACGCAGCAGGTCAGAGTCCACAATAGAATCATTCTTCGCACGCGGGGCGTGCGTCGCTATTATTGAGGTGGACAATGAACAACCAACCACCCGGGCACAGAAACTATTTGCCATGTGGCGCATTACATACAAAGATACAGTGCAGTTGCGCCGTAAGTTGGAGTTTTTCACATACTCTCGTTTTGACATGGAATTCACCTTCGTGGTAACCGCCAACTTCACCAACACTAATAATGGGCATGCACTCAACCAGGTGTACCAGTTAATGTACATNCCCCCAGGGGCACCCACACCAACGTCATGGGATGACTACACTTGGCAAACATCTTCCAACCCGTCCATATTTTACACCTATGGGGCTGCCCCGGCGCGAATCTCAGTGCCATACGTGGGGTTAGCCAATGCTTACTCGCACTTTTACGACGGCTTCGCCAAGGTGCCATTGAAGACAGATGCCAATGACCAGATTGGTGATTCCTTGTACAGCGCCATGACAGTTGATGACTTTGGTGTATTGGCAGTTCCGTTGTCAATGATCACAACCCCACTAAAGTAACCTCCAAAGTCCGCGTTTACATGAAACCCAAACACGTACGTGTCTGGTGCCCTAGACCGCCGCGTGCGGTTCCTTATTATGGACCAGGGGTGGACTATAGGTACAACTTGGAACCCTTATCTGAGAAAGGTTTGACCACATAT
+>1178|VDPV display_name=Sabin3-related
+GGTATTGAAGATTTGATCCCTGAAGTTGCACAGGGCGCCCTAACTTTGTCACTCCCGAAGCAACAGGATAGCTTACGAGATACTAAGGCCAGTGGCCCGGGGCATTCCAAGGAGGTACCTGCACTCACTGCAGTCGAGACTGGAGCCACCAATCCTCTGGTACCATCCGACACAGTTCAAACGCGCCACGTAGTCCAACGACGCAGCAGGTCAGAGTCCACAATAGAATCATTCTTCGCACGCGGGGCGTGCGTCGCTATTATTGAGGTGGACAATGAACAACCAACCACCCGGGCACAGAAACTATTTGCCATGTGGCGCATTACATACAAAGATACAGTGCAGTTGCGCCGTAAGTTGGAGTTTTTCACATACTCTCGTTTTGACATGGAATTCACCTTCGTGGTAACCGCCAACTTCACCAACACTAATAATGGGCATGCACTCAACCAGGTGTACCAGTTAATGTACATNCCCCCAGGGGCACCCACACCAACGTCATGGGATGACTACACTTGGCAAACATCTTCCAACCCGTCCATATTTTACACCTATGGGGCTGCCCCGGCGCGAATCTCAGTGCCATACGTGGGGTTAGCCAATGCTTACTCGCACTTTTACGACGGCTTCGCCAAGGTGCCATTGAAGACAGATGCCAATGACCAGATTGGTGATTCCTTGTACAGCGCCATGACAGTTGATGACTTTGGTGTATTGGCAGTTCCGTTGTCAATGATCACAACCCCACTAAAGTAACCTCCAAAGTCCGCGTTTACATGAAACCCAAACACGTACGTGTCTGGTGCCCTAGACCGCCGCGTGCGGTTCCTTATTATGGACCAGGGGTGGACTATAGGTACAACTTGGAACCCTTATCTGAGAAAGGTTTGACCACATAT
+>1179|VDPV display_name=Sabin3-related
+GGTATTGAAGATTTGATCCCTGAAGTTGCACAGGGCGCCTTAACTTTGTCACTCCCGAAGCAACAGGATAGCTTACCTGATACTAAGGCCAGTGGCCCGGCGCATTCCAAGGAGGTACCTGCACTCACTGCAGTCGAGACTGGAGCCACCAATCCTCTGGTACCATCCGACACAGTTCAAACGCGCCACGTAGTCCAACGACGCAGCAGGTCAGAGTCCACAATAGAATCATTCTTCGCACGCGGGGCGTGCGTCGCTATTATTGAGGTGGACAATGAACAACCAACCACCCGGGCACAGAAACTATTTGCCATGTGGCGCATTACATACAAAGATACAGTGCAGTTGCGCCGTAAGTTGGAGTTTTTCACATACTCTCGTTTTGACATGGAATTCACCTTCGTGGTAACCGCCAACTTCACCAACACTAATAATGGGCATGCACTCAACCAGGTGTACCAGTTAATGTACATNCCCCCAGGGGCACCCACACCAACGTCATGGGATGACTACACTTGGCAAACATCTTCCAACCCGTCCATATTTTACACCTATGGGGCTGCCCCGGCGCGAATCTCAGTGCCATACGTGGGGTTAGCCAATGCTTACTCGCACTTTTACGACGGCTTCGCCAAGGTGCCATTGAAGACAGATGCCAATGACCAGATTGGTGATTCCTTGTACAGCGCCATGACAGTTGATGACTTTGGTGTATTGGCAGTTCCGTTGTCAATGATCACAACCCCACTAAAGTAACCTCCAAAGTCCGCGTTTACATGAAACCCAAACACGTACGTGTCTGGTGCCCTAGACCGCCGCGTGCGGTTCCTTATTATGGACCAGGGGTGGACTATAGGTACAACTTGGAACCCTTATCTGAGAAAGGTTTGACCACATAT
+>1180|VDPV display_name=Sabin2-related
+GGAATTGGTGACATGATTGAGGGGGCCGTTGAAGGGATTACTAAAAATGCATTGGCTCCCCCGACTTCCACCAATAGCCTGCCCGACACGAAGCCGAGCGGTCCAGCCCATTCCAAGGAGATACCTGCATTGACAGCCGTGGAGACAGGGGCTACCAATCCGTTGGTGCCTTCGGACACCGTGCAAACGCGCCATGTCATCCAGAGACGAACGCGATCAGAGTCCACGGTTGAGTCATTCTTTGCAAGAGGGGCTTGTGTGGCTATCATTGAGGTGGACAATGATGCACCGACAAAGCGCGCCAGCAGATTGTTTTCGGTTTGGAAAATAACTTACAAAGATACTGTTCAACTGAGACGCAAACTGGAATTTTTCACATATTCGAGATTTGACATGGAGTTCACTTTTGTGGTCACCTCAAACTACACTGATGCAAATAACGGACATGCATTGAACCAAGTTTATCAGATAATGTATATACCACCCGGAGCACCTATCCCTGGTAAATGGAATGACTACACGTGGCAGACGTCCTCTAACCCGTCGGTGTTTTACACCTATGGGGCGCCCCCAGCAAGAATATCAGTGCCCTACGTGGGAATTGCTAATGCGTATTCCCACTTCTATGATGGGTTTGCAAAAGTACCACTAGCGGATCAAGCCTCAACTGAAGGCGATTCGTTGTACGGTGCTGCCTCACTGAATGATTTTGGATCACTGGCTGTTCGCGTGGTAAATGACCACAACCCCACGCGGCTCACCTCCAAGATCAGAGTGTACATGAAGCCAAAGCATGTCAGAGTCTGGTGCCCACGACCTCCACGAGCAGTCCCATACTTCGGACCAGGTGTTGATTATAAAGATGGGCTCACCCCACTACCAGAAAAGGGATTAACGACTTAT